Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03995

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03990 and BPHYT_RS03995 are separated by 49 nucleotidesBPHYT_RS03995 and BPHYT_RS04000 are separated by 83 nucleotides BPHYT_RS03990: BPHYT_RS03990 - sugar ABC transporter substrate-binding protein, at 907,781 to 908,920 _RS03990 BPHYT_RS03995: BPHYT_RS03995 - protein tyrosine kinase, at 908,970 to 911,204 _RS03995 BPHYT_RS04000: BPHYT_RS04000 - GDP-mannose 4,6-dehydratase, at 911,288 to 912,406 _RS04000 Position (kb) 908 909 910 911 912Strain fitness (log2 ratio) -1 0 1at 908.211 kb on + strand, within BPHYT_RS03990at 908.212 kb on - strand, within BPHYT_RS03990at 908.255 kb on + strand, within BPHYT_RS03990at 908.333 kb on - strand, within BPHYT_RS03990at 908.582 kb on + strand, within BPHYT_RS03990at 908.582 kb on + strand, within BPHYT_RS03990at 909.036 kb on + strandat 909.111 kb on + strandat 909.160 kb on + strandat 909.160 kb on + strandat 909.919 kb on - strand, within BPHYT_RS03995at 910.207 kb on - strand, within BPHYT_RS03995at 910.398 kb on + strand, within BPHYT_RS03995at 911.011 kb on - strandat 911.296 kb on + strandat 911.339 kb on + strandat 911.542 kb on + strand, within BPHYT_RS04000at 911.675 kb on + strand, within BPHYT_RS04000at 911.923 kb on + strand, within BPHYT_RS04000at 911.940 kb on - strand, within BPHYT_RS04000at 912.036 kb on - strand, within BPHYT_RS04000

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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908,211 + BPHYT_RS03990 0.38 +0.1
908,212 - BPHYT_RS03990 0.38 +0.6
908,255 + BPHYT_RS03990 0.42 -1.1
908,333 - BPHYT_RS03990 0.48 +0.4
908,582 + BPHYT_RS03990 0.70 -0.8
908,582 + BPHYT_RS03990 0.70 -0.1
909,036 + -0.2
909,111 + -0.1
909,160 + +1.4
909,160 + +1.0
909,919 - BPHYT_RS03995 0.42 -1.0
910,207 - BPHYT_RS03995 0.55 -0.6
910,398 + BPHYT_RS03995 0.64 -0.5
911,011 - +0.3
911,296 + +0.9
911,339 + -0.9
911,542 + BPHYT_RS04000 0.23 -0.2
911,675 + BPHYT_RS04000 0.35 +0.8
911,923 + BPHYT_RS04000 0.57 +0.5
911,940 - BPHYT_RS04000 0.58 -1.5
912,036 - BPHYT_RS04000 0.67 +0.1

Or see this region's nucleotide sequence