Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02955

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02950 and BPHYT_RS02955 are separated by 100 nucleotidesBPHYT_RS02955 and BPHYT_RS02960 are separated by 77 nucleotides BPHYT_RS02950: BPHYT_RS02950 - NUDIX hydrolase, at 655,253 to 656,116 _RS02950 BPHYT_RS02955: BPHYT_RS02955 - formyltetrahydrofolate deformylase, at 656,217 to 657,086 _RS02955 BPHYT_RS02960: BPHYT_RS02960 - peptidase, at 657,164 to 658,390 _RS02960 Position (kb) 656 657 658Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 655.518 kb on - strand, within BPHYT_RS02950at 655.556 kb on + strand, within BPHYT_RS02950at 655.557 kb on - strand, within BPHYT_RS02950at 655.557 kb on - strand, within BPHYT_RS02950at 655.598 kb on + strand, within BPHYT_RS02950at 655.598 kb on + strand, within BPHYT_RS02950at 655.598 kb on + strand, within BPHYT_RS02950at 655.624 kb on - strand, within BPHYT_RS02950at 655.628 kb on + strand, within BPHYT_RS02950at 655.628 kb on + strand, within BPHYT_RS02950at 655.892 kb on + strand, within BPHYT_RS02950at 656.316 kb on - strand, within BPHYT_RS02955at 656.316 kb on - strand, within BPHYT_RS02955at 656.450 kb on + strand, within BPHYT_RS02955at 656.604 kb on + strand, within BPHYT_RS02955at 656.604 kb on + strand, within BPHYT_RS02955at 656.604 kb on + strand, within BPHYT_RS02955at 656.605 kb on - strand, within BPHYT_RS02955at 656.745 kb on + strand, within BPHYT_RS02955at 656.844 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.895 kb on + strand, within BPHYT_RS02955at 656.896 kb on - strand, within BPHYT_RS02955at 657.098 kb on - strandat 657.098 kb on - strandat 657.371 kb on - strand, within BPHYT_RS02960at 657.435 kb on + strand, within BPHYT_RS02960at 657.435 kb on + strand, within BPHYT_RS02960at 657.486 kb on + strand, within BPHYT_RS02960at 657.525 kb on + strand, within BPHYT_RS02960at 657.526 kb on - strand, within BPHYT_RS02960at 657.799 kb on + strand, within BPHYT_RS02960at 657.799 kb on + strand, within BPHYT_RS02960at 657.799 kb on + strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.801 kb on + strand, within BPHYT_RS02960at 657.978 kb on + strand, within BPHYT_RS02960

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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655,518 - BPHYT_RS02950 0.31 -0.4
655,556 + BPHYT_RS02950 0.35 +0.0
655,557 - BPHYT_RS02950 0.35 -0.6
655,557 - BPHYT_RS02950 0.35 -0.3
655,598 + BPHYT_RS02950 0.40 -1.0
655,598 + BPHYT_RS02950 0.40 -0.3
655,598 + BPHYT_RS02950 0.40 -1.0
655,624 - BPHYT_RS02950 0.43 -1.7
655,628 + BPHYT_RS02950 0.43 +0.5
655,628 + BPHYT_RS02950 0.43 -0.5
655,892 + BPHYT_RS02950 0.74 -0.3
656,316 - BPHYT_RS02955 0.11 -0.3
656,316 - BPHYT_RS02955 0.11 +0.1
656,450 + BPHYT_RS02955 0.27 -0.1
656,604 + BPHYT_RS02955 0.44 -0.8
656,604 + BPHYT_RS02955 0.44 -0.4
656,604 + BPHYT_RS02955 0.44 -2.9
656,605 - BPHYT_RS02955 0.45 +2.8
656,745 + BPHYT_RS02955 0.61 +0.3
656,844 + BPHYT_RS02955 0.72 -1.3
656,895 + BPHYT_RS02955 0.78 -1.7
656,895 + BPHYT_RS02955 0.78 +0.8
656,895 + BPHYT_RS02955 0.78 -0.5
656,895 + BPHYT_RS02955 0.78 -1.3
656,896 - BPHYT_RS02955 0.78 -0.5
657,098 - -0.5
657,098 - +0.4
657,371 - BPHYT_RS02960 0.17 +0.7
657,435 + BPHYT_RS02960 0.22 -0.2
657,435 + BPHYT_RS02960 0.22 -0.8
657,486 + BPHYT_RS02960 0.26 -0.3
657,525 + BPHYT_RS02960 0.29 +0.7
657,526 - BPHYT_RS02960 0.30 +3.9
657,799 + BPHYT_RS02960 0.52 +2.3
657,799 + BPHYT_RS02960 0.52 -0.7
657,799 + BPHYT_RS02960 0.52 +0.1
657,800 - BPHYT_RS02960 0.52 +0.2
657,800 - BPHYT_RS02960 0.52 -0.2
657,800 - BPHYT_RS02960 0.52 +0.2
657,800 - BPHYT_RS02960 0.52 +4.3
657,801 + BPHYT_RS02960 0.52 -0.4
657,978 + BPHYT_RS02960 0.66 +3.3

Or see this region's nucleotide sequence