Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02925

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02915 and BPHYT_RS02920 are separated by 20 nucleotidesBPHYT_RS02920 and BPHYT_RS02925 overlap by 4 nucleotidesBPHYT_RS02925 and BPHYT_RS02930 overlap by 1 nucleotides BPHYT_RS02915: BPHYT_RS02915 - organic solvent tolerance protein OstA, at 648,873 to 649,544 _RS02915 BPHYT_RS02920: BPHYT_RS02920 - hypothetical protein, at 649,565 to 650,173 _RS02920 BPHYT_RS02925: BPHYT_RS02925 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 650,170 to 650,730 _RS02925 BPHYT_RS02930: BPHYT_RS02930 - KpsF/GutQ family protein, at 650,730 to 651,713 _RS02930 Position (kb) 650 651Strain fitness (log2 ratio) -2 -1 0 1 2 3at 651.107 kb on - strand, within BPHYT_RS02930at 651.107 kb on - strand, within BPHYT_RS02930at 651.723 kb on - strandat 651.724 kb on + strandat 651.724 kb on + strandat 651.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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651,107 - BPHYT_RS02930 0.38 -1.7
651,107 - BPHYT_RS02930 0.38 +1.2
651,723 - +2.9
651,724 + +0.3
651,724 + -2.4
651,724 + -1.7

Or see this region's nucleotide sequence