Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01855 and BPHYT_RS01860 are separated by 278 nucleotides BPHYT_RS01860 and BPHYT_RS01865 are separated by 235 nucleotides BPHYT_RS01865 and BPHYT_RS01870 are separated by 108 nucleotides
BPHYT_RS01855: BPHYT_RS01855 - FAD-dependent oxidoreductase, at 421,365 to 422,471
_RS01855
BPHYT_RS01860: BPHYT_RS01860 - high potential iron-sulfur protein, at 422,750 to 423,061
_RS01860
BPHYT_RS01865: BPHYT_RS01865 - major facilitator transporter, at 423,297 to 424,589
_RS01865
BPHYT_RS01870: BPHYT_RS01870 - 6-aminohexanoate-cyclic-dimer hydrolase, at 424,698 to 426,218
_RS01870
Position (kb) 423
424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 422.315 kb on - strand, within BPHYT_RS01855 at 422.647 kb on - strand at 422.689 kb on - strand at 422.731 kb on - strand at 422.731 kb on - strand at 422.732 kb on + strand at 422.880 kb on - strand, within BPHYT_RS01860 at 422.924 kb on + strand, within BPHYT_RS01860 at 422.925 kb on - strand, within BPHYT_RS01860 at 422.953 kb on + strand, within BPHYT_RS01860 at 422.954 kb on - strand, within BPHYT_RS01860 at 422.954 kb on - strand, within BPHYT_RS01860 at 422.960 kb on + strand, within BPHYT_RS01860 at 423.044 kb on + strand at 423.044 kb on + strand at 423.045 kb on - strand at 423.047 kb on - strand at 423.206 kb on - strand at 423.253 kb on - strand at 423.265 kb on + strand at 423.266 kb on - strand at 423.266 kb on - strand at 423.272 kb on + strand at 423.370 kb on - strand at 423.509 kb on - strand, within BPHYT_RS01865 at 423.519 kb on + strand, within BPHYT_RS01865 at 423.520 kb on - strand, within BPHYT_RS01865 at 423.647 kb on - strand, within BPHYT_RS01865 at 423.900 kb on + strand, within BPHYT_RS01865 at 423.901 kb on - strand, within BPHYT_RS01865 at 424.047 kb on + strand, within BPHYT_RS01865 at 424.047 kb on + strand, within BPHYT_RS01865 at 424.048 kb on - strand, within BPHYT_RS01865 at 424.063 kb on - strand, within BPHYT_RS01865 at 424.063 kb on - strand, within BPHYT_RS01865 at 424.101 kb on + strand, within BPHYT_RS01865 at 424.223 kb on + strand, within BPHYT_RS01865 at 424.224 kb on - strand, within BPHYT_RS01865 at 424.239 kb on + strand, within BPHYT_RS01865 at 424.240 kb on - strand, within BPHYT_RS01865 at 424.314 kb on - strand, within BPHYT_RS01865 at 424.327 kb on - strand, within BPHYT_RS01865 at 424.329 kb on + strand, within BPHYT_RS01865 at 424.401 kb on + strand, within BPHYT_RS01865 at 424.402 kb on - strand, within BPHYT_RS01865 at 424.491 kb on + strand at 424.492 kb on - strand at 424.492 kb on - strand at 424.495 kb on - strand at 424.699 kb on + strand at 424.700 kb on - strand at 424.700 kb on - strand at 424.844 kb on - strand at 425.321 kb on + strand, within BPHYT_RS01870 at 425.321 kb on + strand, within BPHYT_RS01870 at 425.322 kb on - strand, within BPHYT_RS01870 at 425.322 kb on - strand, within BPHYT_RS01870 at 425.413 kb on + strand, within BPHYT_RS01870 at 425.420 kb on + strand, within BPHYT_RS01870
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 422,315 - BPHYT_RS01855 0.86 -0.4 422,647 - -0.5 422,689 - +0.2 422,731 - +0.7 422,731 - -0.9 422,732 + -0.1 422,880 - BPHYT_RS01860 0.42 -0.1 422,924 + BPHYT_RS01860 0.56 +0.3 422,925 - BPHYT_RS01860 0.56 +0.2 422,953 + BPHYT_RS01860 0.65 -2.5 422,954 - BPHYT_RS01860 0.65 -0.3 422,954 - BPHYT_RS01860 0.65 -1.3 422,960 + BPHYT_RS01860 0.67 +0.8 423,044 + +1.3 423,044 + -0.1 423,045 - +0.4 423,047 - -0.2 423,206 - +0.0 423,253 - -0.7 423,265 + -2.2 423,266 - +0.3 423,266 - -0.1 423,272 + +0.3 423,370 - +4.7 423,509 - BPHYT_RS01865 0.16 +0.4 423,519 + BPHYT_RS01865 0.17 +0.6 423,520 - BPHYT_RS01865 0.17 +0.5 423,647 - BPHYT_RS01865 0.27 +0.5 423,900 + BPHYT_RS01865 0.47 -2.9 423,901 - BPHYT_RS01865 0.47 +0.1 424,047 + BPHYT_RS01865 0.58 -0.5 424,047 + BPHYT_RS01865 0.58 +0.2 424,048 - BPHYT_RS01865 0.58 +0.2 424,063 - BPHYT_RS01865 0.59 +1.3 424,063 - BPHYT_RS01865 0.59 -0.5 424,101 + BPHYT_RS01865 0.62 +2.9 424,223 + BPHYT_RS01865 0.72 +0.2 424,224 - BPHYT_RS01865 0.72 -0.2 424,239 + BPHYT_RS01865 0.73 -0.0 424,240 - BPHYT_RS01865 0.73 +0.7 424,314 - BPHYT_RS01865 0.79 +1.5 424,327 - BPHYT_RS01865 0.80 -1.8 424,329 + BPHYT_RS01865 0.80 +1.0 424,401 + BPHYT_RS01865 0.85 +1.7 424,402 - BPHYT_RS01865 0.85 -0.3 424,491 + +0.0 424,492 - +0.2 424,492 - +1.0 424,495 - +0.5 424,699 + +0.3 424,700 - +0.2 424,700 - -0.2 424,844 - +0.5 425,321 + BPHYT_RS01870 0.41 -0.6 425,321 + BPHYT_RS01870 0.41 -0.6 425,322 - BPHYT_RS01870 0.41 -0.0 425,322 - BPHYT_RS01870 0.41 +0.5 425,413 + BPHYT_RS01870 0.47 -0.4 425,420 + BPHYT_RS01870 0.47 +2.9
Or see this region's nucleotide sequence