Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01755 and BPHYT_RS01760 are separated by 129 nucleotides BPHYT_RS01760 and BPHYT_RS01765 are separated by 22 nucleotides BPHYT_RS01765 and BPHYT_RS01770 are separated by 10 nucleotides BPHYT_RS01770 and BPHYT_RS01775 are separated by 378 nucleotides
BPHYT_RS01755: BPHYT_RS01755 - ATPase, at 399,343 to 400,230
_RS01755
BPHYT_RS01760: BPHYT_RS01760 - carbon-monoxide dehydrogenase, at 400,360 to 401,157
_RS01760
BPHYT_RS01765: BPHYT_RS01765 - carbon-monoxide dehydrogenase, at 401,180 to 403,561
_RS01765
BPHYT_RS01770: BPHYT_RS01770 - carbon monoxide dehydrogenase, at 403,572 to 404,090
_RS01770
BPHYT_RS01775: BPHYT_RS01775 - hypothetical protein, at 404,469 to 404,813
_RS01775
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 400.418 kb on + strand at 400.710 kb on - strand, within BPHYT_RS01760 at 400.710 kb on - strand, within BPHYT_RS01760 at 400.710 kb on - strand, within BPHYT_RS01760 at 400.866 kb on + strand, within BPHYT_RS01760 at 401.141 kb on + strand at 401.153 kb on + strand at 401.153 kb on + strand at 401.154 kb on - strand at 401.154 kb on - strand at 401.154 kb on - strand at 401.430 kb on + strand, within BPHYT_RS01765 at 401.466 kb on + strand, within BPHYT_RS01765 at 401.467 kb on - strand, within BPHYT_RS01765 at 401.646 kb on + strand, within BPHYT_RS01765 at 401.646 kb on + strand, within BPHYT_RS01765 at 401.647 kb on - strand, within BPHYT_RS01765 at 401.647 kb on - strand, within BPHYT_RS01765 at 401.668 kb on - strand, within BPHYT_RS01765 at 401.713 kb on - strand, within BPHYT_RS01765 at 401.727 kb on + strand, within BPHYT_RS01765 at 401.727 kb on + strand, within BPHYT_RS01765 at 402.137 kb on + strand, within BPHYT_RS01765 at 402.140 kb on - strand, within BPHYT_RS01765 at 402.171 kb on + strand, within BPHYT_RS01765 at 402.171 kb on + strand, within BPHYT_RS01765 at 402.181 kb on - strand, within BPHYT_RS01765 at 402.298 kb on - strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.414 kb on + strand, within BPHYT_RS01765 at 402.415 kb on - strand, within BPHYT_RS01765 at 402.415 kb on - strand, within BPHYT_RS01765 at 402.493 kb on - strand, within BPHYT_RS01765 at 402.534 kb on + strand, within BPHYT_RS01765 at 402.573 kb on + strand, within BPHYT_RS01765 at 402.574 kb on - strand, within BPHYT_RS01765 at 402.894 kb on + strand, within BPHYT_RS01765 at 402.895 kb on - strand, within BPHYT_RS01765 at 402.903 kb on + strand, within BPHYT_RS01765 at 402.903 kb on + strand, within BPHYT_RS01765 at 402.904 kb on - strand, within BPHYT_RS01765 at 402.924 kb on + strand, within BPHYT_RS01765 at 403.057 kb on - strand, within BPHYT_RS01765 at 403.146 kb on + strand, within BPHYT_RS01765 at 403.365 kb on - strand at 403.479 kb on + strand at 403.506 kb on + strand at 403.507 kb on - strand at 403.516 kb on + strand at 403.516 kb on + strand at 403.516 kb on + strand at 403.517 kb on - strand at 404.202 kb on - strand at 404.226 kb on + strand at 404.305 kb on - strand at 404.307 kb on + strand at 404.307 kb on + strand at 404.308 kb on - strand at 404.335 kb on - strand at 404.406 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.425 kb on + strand at 404.426 kb on - strand at 404.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 400,418 + +0.1 400,710 - BPHYT_RS01760 0.44 +0.5 400,710 - BPHYT_RS01760 0.44 +0.5 400,710 - BPHYT_RS01760 0.44 +0.1 400,866 + BPHYT_RS01760 0.63 +0.6 401,141 + -0.3 401,153 + -3.1 401,153 + -0.6 401,154 - -1.4 401,154 - +0.5 401,154 - -0.3 401,430 + BPHYT_RS01765 0.10 -2.9 401,466 + BPHYT_RS01765 0.12 +0.3 401,467 - BPHYT_RS01765 0.12 -0.3 401,646 + BPHYT_RS01765 0.20 +0.2 401,646 + BPHYT_RS01765 0.20 +1.5 401,647 - BPHYT_RS01765 0.20 -0.3 401,647 - BPHYT_RS01765 0.20 -0.5 401,668 - BPHYT_RS01765 0.20 -0.9 401,713 - BPHYT_RS01765 0.22 -0.3 401,727 + BPHYT_RS01765 0.23 -0.9 401,727 + BPHYT_RS01765 0.23 +0.5 402,137 + BPHYT_RS01765 0.40 -0.2 402,140 - BPHYT_RS01765 0.40 +2.4 402,171 + BPHYT_RS01765 0.42 +0.1 402,171 + BPHYT_RS01765 0.42 -0.2 402,181 - BPHYT_RS01765 0.42 +4.1 402,298 - BPHYT_RS01765 0.47 -1.2 402,414 + BPHYT_RS01765 0.52 +0.6 402,414 + BPHYT_RS01765 0.52 +0.7 402,414 + BPHYT_RS01765 0.52 +1.0 402,414 + BPHYT_RS01765 0.52 +1.7 402,414 + BPHYT_RS01765 0.52 +0.4 402,414 + BPHYT_RS01765 0.52 +2.9 402,415 - BPHYT_RS01765 0.52 +1.0 402,415 - BPHYT_RS01765 0.52 +0.4 402,493 - BPHYT_RS01765 0.55 +0.2 402,534 + BPHYT_RS01765 0.57 +1.3 402,573 + BPHYT_RS01765 0.58 -0.1 402,574 - BPHYT_RS01765 0.59 +0.6 402,894 + BPHYT_RS01765 0.72 -1.0 402,895 - BPHYT_RS01765 0.72 -0.0 402,903 + BPHYT_RS01765 0.72 -0.5 402,903 + BPHYT_RS01765 0.72 -0.4 402,904 - BPHYT_RS01765 0.72 -0.1 402,924 + BPHYT_RS01765 0.73 -0.0 403,057 - BPHYT_RS01765 0.79 -1.1 403,146 + BPHYT_RS01765 0.83 -0.2 403,365 - +0.0 403,479 + -2.6 403,506 + +0.3 403,507 - -3.2 403,516 + +0.0 403,516 + -1.8 403,516 + -0.3 403,517 - +1.3 404,202 - -0.5 404,226 + -0.3 404,305 - +0.1 404,307 + -0.1 404,307 + -0.1 404,308 - +0.7 404,335 - -1.5 404,406 + +0.4 404,425 + +0.3 404,425 + -0.4 404,425 + +0.5 404,425 + -0.2 404,426 - -0.3 404,470 + -0.1
Or see this region's nucleotide sequence