Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4330

Experiment: BHIS with Trimethoprim 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4328 and BT4329 are separated by 6 nucleotidesBT4329 and BT4330 are separated by 13 nucleotidesBT4330 and BT4331 are separated by 376 nucleotides BT4328: BT4328 - conserved hypothetical protein (NCBI ptt file), at 5,701,392 to 5,702,090 BT4328 BT4329: BT4329 - conserved hypothetical protein with a conserved domain (NCBI ptt file), at 5,702,097 to 5,702,693 BT4329 BT4330: BT4330 - xanthosine permease (NCBI ptt file), at 5,702,707 to 5,703,957 BT4330 BT4331: BT4331 - conserved hypothetical protein (NCBI ptt file), at 5,704,334 to 5,705,512 BT4331 Position (kb) 5702 5703 5704Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 5701.957 kb on + strand, within BT4328at 5701.958 kb on - strand, within BT4328at 5701.980 kb on - strand, within BT4328at 5702.090 kb on + strandat 5702.205 kb on - strand, within BT4329at 5702.372 kb on + strand, within BT4329at 5702.378 kb on + strand, within BT4329at 5702.420 kb on - strand, within BT4329at 5702.420 kb on - strand, within BT4329at 5702.433 kb on - strand, within BT4329at 5702.471 kb on + strand, within BT4329at 5702.479 kb on - strand, within BT4329at 5702.482 kb on - strand, within BT4329at 5702.543 kb on + strand, within BT4329at 5702.545 kb on + strand, within BT4329at 5702.577 kb on + strand, within BT4329at 5702.578 kb on - strand, within BT4329at 5702.585 kb on + strand, within BT4329at 5702.586 kb on - strand, within BT4329at 5702.664 kb on + strandat 5702.664 kb on + strandat 5702.674 kb on - strandat 5702.708 kb on + strandat 5702.713 kb on + strandat 5702.714 kb on - strandat 5702.718 kb on + strandat 5702.793 kb on + strandat 5702.793 kb on + strandat 5702.825 kb on - strandat 5702.825 kb on - strandat 5702.842 kb on + strand, within BT4330at 5702.842 kb on + strand, within BT4330at 5703.011 kb on + strand, within BT4330at 5703.241 kb on - strand, within BT4330at 5703.273 kb on - strand, within BT4330at 5703.350 kb on - strand, within BT4330at 5703.353 kb on - strand, within BT4330at 5703.434 kb on + strand, within BT4330at 5703.437 kb on - strand, within BT4330at 5703.466 kb on + strand, within BT4330at 5703.509 kb on - strand, within BT4330at 5703.585 kb on + strand, within BT4330at 5703.605 kb on + strand, within BT4330at 5703.606 kb on - strand, within BT4330at 5703.606 kb on - strand, within BT4330at 5703.606 kb on - strand, within BT4330at 5703.606 kb on - strand, within BT4330at 5703.639 kb on + strand, within BT4330at 5703.639 kb on + strand, within BT4330at 5703.639 kb on + strand, within BT4330at 5703.640 kb on - strand, within BT4330at 5703.640 kb on - strand, within BT4330at 5703.640 kb on - strand, within BT4330at 5703.642 kb on - strand, within BT4330at 5703.642 kb on - strand, within BT4330at 5703.642 kb on - strand, within BT4330at 5703.643 kb on + strand, within BT4330at 5703.643 kb on + strand, within BT4330at 5703.644 kb on - strand, within BT4330at 5703.671 kb on + strand, within BT4330at 5703.705 kb on - strand, within BT4330at 5703.705 kb on - strand, within BT4330at 5703.746 kb on - strand, within BT4330at 5703.769 kb on - strand, within BT4330at 5703.876 kb on - strandat 5703.930 kb on + strandat 5703.931 kb on - strandat 5703.949 kb on + strandat 5703.996 kb on + strandat 5703.996 kb on + strandat 5704.044 kb on + strandat 5704.055 kb on + strandat 5704.090 kb on + strandat 5704.090 kb on + strandat 5704.117 kb on + strandat 5704.119 kb on + strandat 5704.172 kb on + strandat 5704.211 kb on - strandat 5704.330 kb on + strandat 5704.331 kb on - strandat 5704.331 kb on - strandat 5704.332 kb on + strandat 5704.332 kb on + strandat 5704.333 kb on - strandat 5704.333 kb on - strandat 5704.333 kb on - strandat 5704.336 kb on - strandat 5704.336 kb on - strandat 5704.340 kb on + strandat 5704.340 kb on + strandat 5704.341 kb on - strandat 5704.341 kb on - strandat 5704.344 kb on + strandat 5704.344 kb on + strandat 5704.344 kb on + strandat 5704.344 kb on + strandat 5704.349 kb on + strandat 5704.349 kb on + strandat 5704.366 kb on - strandat 5704.385 kb on + strandat 5704.387 kb on + strandat 5704.387 kb on + strandat 5704.387 kb on + strandat 5704.433 kb on + strandat 5704.433 kb on + strandat 5704.433 kb on + strandat 5704.433 kb on + strandat 5704.433 kb on + strandat 5704.434 kb on - strandat 5704.434 kb on - strandat 5704.434 kb on - strandat 5704.434 kb on - strandat 5704.434 kb on - strandat 5704.434 kb on - strandat 5704.450 kb on + strandat 5704.450 kb on + strandat 5704.604 kb on - strand, within BT4331at 5704.644 kb on + strand, within BT4331at 5704.669 kb on - strand, within BT4331at 5704.727 kb on + strand, within BT4331at 5704.728 kb on - strand, within BT4331at 5704.778 kb on + strand, within BT4331at 5704.802 kb on - strand, within BT4331at 5704.806 kb on + strandat 5704.806 kb on + strand, within BT4331at 5704.806 kb on + strand, within BT4331at 5704.807 kb on - strand, within BT4331at 5704.807 kb on - strand, within BT4331at 5704.807 kb on - strand, within BT4331at 5704.807 kb on - strand, within BT4331at 5704.827 kb on + strand, within BT4331at 5704.828 kb on - strand, within BT4331at 5704.837 kb on + strand, within BT4331at 5704.837 kb on + strand, within BT4331at 5704.838 kb on - strand, within BT4331at 5704.863 kb on + strand, within BT4331at 5704.864 kb on - strand, within BT4331at 5704.934 kb on + strand, within BT4331at 5704.935 kb on - strand, within BT4331

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Trimethoprim 0.0125 mM
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5,701,957 + BT4328 0.81 -4.2
5,701,958 - BT4328 0.81 -2.3
5,701,980 - BT4328 0.84 -0.7
5,702,090 + +1.0
5,702,205 - BT4329 0.18 -1.0
5,702,372 + BT4329 0.46 -2.5
5,702,378 + BT4329 0.47 -2.6
5,702,420 - BT4329 0.54 +2.0
5,702,420 - BT4329 0.54 -2.8
5,702,433 - BT4329 0.56 -2.3
5,702,471 + BT4329 0.63 -2.0
5,702,479 - BT4329 0.64 +1.2
5,702,482 - BT4329 0.64 +2.0
5,702,543 + BT4329 0.75 -1.9
5,702,545 + BT4329 0.75 -1.2
5,702,577 + BT4329 0.80 -1.0
5,702,578 - BT4329 0.81 -0.5
5,702,585 + BT4329 0.82 -2.7
5,702,586 - BT4329 0.82 +0.0
5,702,664 + -0.0
5,702,664 + -4.6
5,702,674 - -1.0
5,702,708 + -3.4
5,702,713 + -4.2
5,702,714 - +0.0
5,702,718 + -3.4
5,702,793 + -2.0
5,702,793 + -1.0
5,702,825 - -2.3
5,702,825 - -2.3
5,702,842 + BT4330 0.11 -2.6
5,702,842 + BT4330 0.11 -3.8
5,703,011 + BT4330 0.24 -2.8
5,703,241 - BT4330 0.43 -2.6
5,703,273 - BT4330 0.45 -5.6
5,703,350 - BT4330 0.51 -2.0
5,703,353 - BT4330 0.52 -2.8
5,703,434 + BT4330 0.58 -4.8
5,703,437 - BT4330 0.58 -3.4
5,703,466 + BT4330 0.61 -1.6
5,703,509 - BT4330 0.64 -0.6
5,703,585 + BT4330 0.70 +0.0
5,703,605 + BT4330 0.72 -4.5
5,703,606 - BT4330 0.72 +0.0
5,703,606 - BT4330 0.72 -3.9
5,703,606 - BT4330 0.72 -3.2
5,703,606 - BT4330 0.72 -2.6
5,703,639 + BT4330 0.75 -2.0
5,703,639 + BT4330 0.75 -2.0
5,703,639 + BT4330 0.75 -1.6
5,703,640 - BT4330 0.75 -1.6
5,703,640 - BT4330 0.75 -4.6
5,703,640 - BT4330 0.75 -2.3
5,703,642 - BT4330 0.75 -4.4
5,703,642 - BT4330 0.75 -5.2
5,703,642 - BT4330 0.75 -4.4
5,703,643 + BT4330 0.75 -2.8
5,703,643 + BT4330 0.75 -2.8
5,703,644 - BT4330 0.75 -2.6
5,703,671 + BT4330 0.77 -2.3
5,703,705 - BT4330 0.80 -2.3
5,703,705 - BT4330 0.80 -2.0
5,703,746 - BT4330 0.83 -3.9
5,703,769 - BT4330 0.85 -2.0
5,703,876 - -4.4
5,703,930 + -4.6
5,703,931 - -4.1
5,703,949 + -5.2
5,703,996 + -4.3
5,703,996 + -2.3
5,704,044 + -3.8
5,704,055 + -5.9
5,704,090 + -5.1
5,704,090 + -5.5
5,704,117 + -4.0
5,704,119 + -1.2
5,704,172 + -1.0
5,704,211 - -1.6
5,704,330 + -2.3
5,704,331 - +1.0
5,704,331 - -2.0
5,704,332 + +0.0
5,704,332 + -4.5
5,704,333 - -2.3
5,704,333 - -1.0
5,704,333 - -1.0
5,704,336 - -2.8
5,704,336 - -2.3
5,704,340 + -4.2
5,704,340 + -3.2
5,704,341 - -1.6
5,704,341 - -3.3
5,704,344 + +0.0
5,704,344 + +0.0
5,704,344 + -0.4
5,704,344 + -3.8
5,704,349 + -1.3
5,704,349 + -4.4
5,704,366 - -3.4
5,704,385 + +0.0
5,704,387 + -3.3
5,704,387 + -3.3
5,704,387 + -3.6
5,704,433 + -2.2
5,704,433 + +0.3
5,704,433 + -4.4
5,704,433 + -5.0
5,704,433 + -5.0
5,704,434 - -3.6
5,704,434 - -4.4
5,704,434 - -3.3
5,704,434 - -2.8
5,704,434 - +1.7
5,704,434 - -2.3
5,704,450 + -3.3
5,704,450 + -3.7
5,704,604 - BT4331 0.23 -1.2
5,704,644 + BT4331 0.26 -3.8
5,704,669 - BT4331 0.28 -3.1
5,704,727 + BT4331 0.33 +0.1
5,704,728 - BT4331 0.33 -4.2
5,704,778 + BT4331 0.38 -1.0
5,704,802 - BT4331 0.40 -3.2
5,704,806 + +0.0
5,704,806 + BT4331 0.40 -2.0
5,704,806 + BT4331 0.40 -2.9
5,704,807 - BT4331 0.40 -3.2
5,704,807 - BT4331 0.40 -3.2
5,704,807 - BT4331 0.40 -3.3
5,704,807 - BT4331 0.40 -2.6
5,704,827 + BT4331 0.42 -5.2
5,704,828 - BT4331 0.42 -3.8
5,704,837 + BT4331 0.43 -5.8
5,704,837 + BT4331 0.43 -4.1
5,704,838 - BT4331 0.43 -2.5
5,704,863 + BT4331 0.45 -4.1
5,704,864 - BT4331 0.45 -0.6
5,704,934 + BT4331 0.51 +0.6
5,704,935 - BT4331 0.51 -3.2

Or see this region's nucleotide sequence