Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0525

Experiment: BHIS with Trimethoprim 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0523 and BT0524 are separated by 12 nucleotidesBT0524 and BT0525 are separated by 241 nucleotidesBT0525 and BT0526 are separated by 212 nucleotides BT0523: BT0523 - putative glycosyltransferase (NCBI ptt file), at 645,248 to 646,408 BT0523 BT0524: BT0524 - putative two-component system response regulator (NCBI ptt file), at 646,421 to 646,786 BT0524 BT0525: BT0525 - outer membrane protein, function unknown (NCBI ptt file), at 647,028 to 649,490 BT0525 BT0526: BT0526 - L-asparaginase I (NCBI ptt file), at 649,703 to 650,743 BT0526 Position (kb) 647 648 649 650Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 646.112 kb on - strand, within BT0523at 646.112 kb on - strand, within BT0523at 646.120 kb on + strand, within BT0523at 646.148 kb on - strand, within BT0523at 646.160 kb on - strand, within BT0523at 646.163 kb on - strand, within BT0523at 646.178 kb on + strand, within BT0523at 646.178 kb on + strand, within BT0523at 646.179 kb on - strand, within BT0523at 646.187 kb on - strand, within BT0523at 646.287 kb on - strand, within BT0523at 646.303 kb on + strandat 646.332 kb on + strandat 646.333 kb on - strandat 646.367 kb on + strandat 646.393 kb on - strandat 646.393 kb on - strandat 646.526 kb on - strand, within BT0524at 646.588 kb on - strand, within BT0524at 646.621 kb on + strand, within BT0524at 646.654 kb on + strand, within BT0524at 646.655 kb on - strand, within BT0524at 646.655 kb on - strand, within BT0524at 646.674 kb on - strand, within BT0524at 646.702 kb on + strand, within BT0524at 646.702 kb on + strand, within BT0524at 646.711 kb on - strand, within BT0524at 646.726 kb on - strand, within BT0524at 646.726 kb on - strand, within BT0524at 646.728 kb on - strand, within BT0524at 646.729 kb on + strand, within BT0524at 646.729 kb on + strand, within BT0524at 646.730 kb on - strand, within BT0524at 646.827 kb on + strandat 646.828 kb on - strandat 646.837 kb on - strandat 646.956 kb on + strandat 646.956 kb on + strandat 646.956 kb on + strandat 647.037 kb on - strandat 647.150 kb on - strandat 647.214 kb on - strandat 647.307 kb on + strand, within BT0525at 647.308 kb on - strand, within BT0525at 647.338 kb on - strand, within BT0525at 647.385 kb on + strand, within BT0525at 647.385 kb on + strand, within BT0525at 647.421 kb on - strand, within BT0525at 647.427 kb on - strand, within BT0525at 647.527 kb on + strand, within BT0525at 647.528 kb on - strand, within BT0525at 647.583 kb on - strand, within BT0525at 647.680 kb on - strand, within BT0525at 647.712 kb on - strand, within BT0525at 647.723 kb on + strand, within BT0525at 647.723 kb on + strand, within BT0525at 647.724 kb on - strand, within BT0525at 647.731 kb on - strand, within BT0525at 647.784 kb on + strand, within BT0525at 647.785 kb on - strand, within BT0525at 647.813 kb on + strand, within BT0525at 647.813 kb on + strand, within BT0525at 647.943 kb on + strand, within BT0525at 647.983 kb on - strand, within BT0525at 648.039 kb on - strand, within BT0525at 648.039 kb on - strand, within BT0525at 648.039 kb on - strand, within BT0525at 648.053 kb on + strand, within BT0525at 648.126 kb on + strand, within BT0525at 648.127 kb on - strand, within BT0525at 648.127 kb on - strand, within BT0525at 648.138 kb on + strand, within BT0525at 648.144 kb on - strand, within BT0525at 648.144 kb on - strand, within BT0525at 648.144 kb on - strand, within BT0525at 648.179 kb on + strand, within BT0525at 648.200 kb on + strand, within BT0525at 648.207 kb on - strand, within BT0525at 648.239 kb on + strand, within BT0525at 648.246 kb on - strand, within BT0525at 648.252 kb on + strand, within BT0525at 648.253 kb on - strand, within BT0525at 648.298 kb on + strand, within BT0525at 648.298 kb on + strand, within BT0525at 648.311 kb on + strand, within BT0525at 648.396 kb on - strand, within BT0525at 648.435 kb on - strand, within BT0525at 648.440 kb on + strand, within BT0525at 648.528 kb on + strand, within BT0525at 648.569 kb on + strand, within BT0525at 648.570 kb on - strand, within BT0525at 648.570 kb on - strand, within BT0525at 648.593 kb on - strand, within BT0525at 648.623 kb on + strand, within BT0525at 648.660 kb on + strand, within BT0525at 648.807 kb on + strand, within BT0525at 648.808 kb on - strand, within BT0525at 648.852 kb on - strand, within BT0525at 648.852 kb on - strand, within BT0525at 648.881 kb on + strand, within BT0525at 649.001 kb on - strand, within BT0525at 649.064 kb on + strand, within BT0525at 649.065 kb on - strand, within BT0525at 649.150 kb on + strand, within BT0525at 649.151 kb on - strand, within BT0525at 649.228 kb on - strand, within BT0525at 649.228 kb on - strand, within BT0525at 649.308 kb on + strandat 649.309 kb on - strandat 649.317 kb on - strandat 649.328 kb on + strandat 649.328 kb on + strandat 649.329 kb on - strandat 649.329 kb on - strandat 649.400 kb on - strandat 649.402 kb on - strandat 649.432 kb on - strandat 649.441 kb on - strandat 649.444 kb on - strandat 649.460 kb on + strandat 649.460 kb on + strandat 649.490 kb on + strandat 649.532 kb on - strandat 649.912 kb on + strand, within BT0526at 650.075 kb on + strand, within BT0526at 650.103 kb on + strand, within BT0526at 650.143 kb on + strand, within BT0526at 650.164 kb on + strand, within BT0526at 650.175 kb on - strand, within BT0526at 650.216 kb on - strand, within BT0526at 650.243 kb on - strand, within BT0526at 650.243 kb on - strand, within BT0526at 650.282 kb on + strand, within BT0526at 650.283 kb on - strand, within BT0526at 650.296 kb on + strand, within BT0526at 650.464 kb on + strand, within BT0526at 650.465 kb on - strand, within BT0526

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Trimethoprim 0.0125 mM
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646,112 - BT0523 0.74 +1.0
646,112 - BT0523 0.74 +0.8
646,120 + BT0523 0.75 +1.1
646,148 - BT0523 0.78 +0.5
646,160 - BT0523 0.79 -1.3
646,163 - BT0523 0.79 -2.8
646,178 + BT0523 0.80 +0.9
646,178 + BT0523 0.80 +0.7
646,179 - BT0523 0.80 -2.3
646,187 - BT0523 0.81 +2.3
646,287 - BT0523 0.89 -1.9
646,303 + +3.3
646,332 + -1.5
646,333 - -2.0
646,367 + +0.0
646,393 - -0.3
646,393 - -3.3
646,526 - BT0524 0.29 -1.9
646,588 - BT0524 0.46 -0.9
646,621 + BT0524 0.55 +0.7
646,654 + BT0524 0.64 -2.6
646,655 - BT0524 0.64 -1.5
646,655 - BT0524 0.64 +0.3
646,674 - BT0524 0.69 -4.2
646,702 + BT0524 0.77 +1.8
646,702 + BT0524 0.77 -1.3
646,711 - BT0524 0.79 -4.7
646,726 - BT0524 0.83 +1.0
646,726 - BT0524 0.83 +3.0
646,728 - BT0524 0.84 -1.1
646,729 + BT0524 0.84 -0.3
646,729 + BT0524 0.84 +2.7
646,730 - BT0524 0.84 -2.6
646,827 + -0.1
646,828 - +2.0
646,837 - -1.8
646,956 + +1.3
646,956 + +0.1
646,956 + +2.7
647,037 - +1.7
647,150 - -2.9
647,214 - +2.5
647,307 + BT0525 0.11 +1.3
647,308 - BT0525 0.11 -2.1
647,338 - BT0525 0.13 +0.7
647,385 + BT0525 0.14 +2.7
647,385 + BT0525 0.14 +0.7
647,421 - BT0525 0.16 +1.3
647,427 - BT0525 0.16 +3.1
647,527 + BT0525 0.20 +1.0
647,528 - BT0525 0.20 +1.0
647,583 - BT0525 0.23 +2.1
647,680 - BT0525 0.26 -0.7
647,712 - BT0525 0.28 -2.9
647,723 + BT0525 0.28 -0.7
647,723 + BT0525 0.28 +0.8
647,724 - BT0525 0.28 +0.2
647,731 - BT0525 0.29 -2.3
647,784 + BT0525 0.31 +1.3
647,785 - BT0525 0.31 -0.2
647,813 + BT0525 0.32 +1.8
647,813 + BT0525 0.32 -1.9
647,943 + BT0525 0.37 +2.0
647,983 - BT0525 0.39 -2.9
648,039 - BT0525 0.41 -3.3
648,039 - BT0525 0.41 -0.7
648,039 - BT0525 0.41 -0.3
648,053 + BT0525 0.42 -0.4
648,126 + BT0525 0.45 +3.2
648,127 - BT0525 0.45 -3.3
648,127 - BT0525 0.45 -2.1
648,138 + BT0525 0.45 +0.6
648,144 - BT0525 0.45 -0.3
648,144 - BT0525 0.45 +0.4
648,144 - BT0525 0.45 +2.9
648,179 + BT0525 0.47 -2.6
648,200 + BT0525 0.48 +2.3
648,207 - BT0525 0.48 +0.7
648,239 + BT0525 0.49 +0.2
648,246 - BT0525 0.49 -0.8
648,252 + BT0525 0.50 -0.7
648,253 - BT0525 0.50 +1.6
648,298 + BT0525 0.52 -1.7
648,298 + BT0525 0.52 +1.3
648,311 + BT0525 0.52 -1.3
648,396 - BT0525 0.56 -3.6
648,435 - BT0525 0.57 -1.7
648,440 + BT0525 0.57 +1.5
648,528 + BT0525 0.61 +0.4
648,569 + BT0525 0.63 -2.3
648,570 - BT0525 0.63 -0.9
648,570 - BT0525 0.63 +0.1
648,593 - BT0525 0.64 -0.3
648,623 + BT0525 0.65 +0.4
648,660 + BT0525 0.66 +2.1
648,807 + BT0525 0.72 +2.0
648,808 - BT0525 0.72 +0.3
648,852 - BT0525 0.74 -1.9
648,852 - BT0525 0.74 +0.0
648,881 + BT0525 0.75 +0.7
649,001 - BT0525 0.80 +1.0
649,064 + BT0525 0.83 +1.1
649,065 - BT0525 0.83 -4.4
649,150 + BT0525 0.86 +1.2
649,151 - BT0525 0.86 -0.3
649,228 - BT0525 0.89 +0.3
649,228 - BT0525 0.89 -0.7
649,308 + +1.7
649,309 - +2.0
649,317 - +2.0
649,328 + -0.3
649,328 + -0.9
649,329 - -2.1
649,329 - -2.1
649,400 - -0.3
649,402 - -1.2
649,432 - +2.0
649,441 - -3.1
649,444 - -0.3
649,460 + +1.7
649,460 + -0.3
649,490 + +1.5
649,532 - +1.5
649,912 + BT0526 0.20 +0.7
650,075 + BT0526 0.36 -0.7
650,103 + BT0526 0.38 +3.7
650,143 + BT0526 0.42 -3.1
650,164 + BT0526 0.44 -0.3
650,175 - BT0526 0.45 +0.3
650,216 - BT0526 0.49 -3.8
650,243 - BT0526 0.52 +4.0
650,243 - BT0526 0.52 -0.5
650,282 + BT0526 0.56 -0.6
650,283 - BT0526 0.56 +2.7
650,296 + BT0526 0.57 +1.3
650,464 + BT0526 0.73 +1.6
650,465 - BT0526 0.73 -4.4

Or see this region's nucleotide sequence