Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.956.1 and Xcc-8004.957.1 overlap by 4 nucleotides Xcc-8004.957.1 and Xcc-8004.958.1 are separated by 314 nucleotides
Xcc-8004.956.1: Xcc-8004.956.1 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6), at 899,521 to 900,549
Xcc-8004.956.1
Xcc-8004.957.1: Xcc-8004.957.1 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25), at 900,546 to 901,706
Xcc-8004.957.1
Xcc-8004.958.1: Xcc-8004.958.1 - Nisin-resistance protein, at 902,021 to 903,391
Xcc-8004.958.1
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.713 kb on + strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.810 kb on - strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.502 kb on - strand at 900.832 kb on - strand, within Xcc-8004.957.1 at 900.963 kb on + strand, within Xcc-8004.957.1 at 901.162 kb on - strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.215 kb on + strand, within Xcc-8004.957.1 at 901.216 kb on - strand, within Xcc-8004.957.1 at 901.216 kb on - strand, within Xcc-8004.957.1 at 901.216 kb on - strand, within Xcc-8004.957.1 at 901.462 kb on + strand, within Xcc-8004.957.1 at 901.463 kb on - strand, within Xcc-8004.957.1 at 901.739 kb on + strand at 901.739 kb on + strand at 901.739 kb on + strand at 901.794 kb on + strand at 901.923 kb on - strand at 901.985 kb on + strand at 902.179 kb on - strand, within Xcc-8004.958.1 at 902.410 kb on + strand, within Xcc-8004.958.1 at 902.488 kb on + strand, within Xcc-8004.958.1 at 902.489 kb on - strand, within Xcc-8004.958.1 at 902.584 kb on - strand, within Xcc-8004.958.1 at 902.584 kb on - strand, within Xcc-8004.958.1 at 902.663 kb on + strand, within Xcc-8004.958.1 at 902.663 kb on + strand, within Xcc-8004.958.1 at 902.664 kb on - strand, within Xcc-8004.958.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 899,705 - Xcc-8004.956.1 0.18 +0.0 899,705 - Xcc-8004.956.1 0.18 -0.6 899,713 + Xcc-8004.956.1 0.19 +0.2 899,714 - Xcc-8004.956.1 0.19 +1.7 899,714 - Xcc-8004.956.1 0.19 -0.6 899,776 + Xcc-8004.956.1 0.25 +1.6 899,776 + Xcc-8004.956.1 0.25 -0.2 899,777 - Xcc-8004.956.1 0.25 +0.6 899,777 - Xcc-8004.956.1 0.25 +0.6 899,777 - Xcc-8004.956.1 0.25 -1.2 899,777 - Xcc-8004.956.1 0.25 +0.3 899,809 + Xcc-8004.956.1 0.28 -0.6 899,809 + Xcc-8004.956.1 0.28 +0.7 899,810 - Xcc-8004.956.1 0.28 -0.5 899,992 + Xcc-8004.956.1 0.46 +0.7 899,992 + Xcc-8004.956.1 0.46 +0.2 899,993 - Xcc-8004.956.1 0.46 +0.5 899,993 - Xcc-8004.956.1 0.46 +0.1 899,993 - Xcc-8004.956.1 0.46 -0.2 899,993 - Xcc-8004.956.1 0.46 +0.7 900,238 + Xcc-8004.956.1 0.70 +0.1 900,238 + Xcc-8004.956.1 0.70 +0.7 900,238 + Xcc-8004.956.1 0.70 +0.8 900,239 - Xcc-8004.956.1 0.70 -0.7 900,239 - Xcc-8004.956.1 0.70 -0.4 900,502 - +0.2 900,832 - Xcc-8004.957.1 0.25 -3.3 900,963 + Xcc-8004.957.1 0.36 -0.6 901,162 - Xcc-8004.957.1 0.53 -2.2 901,215 + Xcc-8004.957.1 0.58 -0.8 901,215 + Xcc-8004.957.1 0.58 +1.0 901,215 + Xcc-8004.957.1 0.58 -0.4 901,215 + Xcc-8004.957.1 0.58 -1.0 901,215 + Xcc-8004.957.1 0.58 -2.2 901,216 - Xcc-8004.957.1 0.58 -1.6 901,216 - Xcc-8004.957.1 0.58 -1.7 901,216 - Xcc-8004.957.1 0.58 -0.5 901,462 + Xcc-8004.957.1 0.79 +0.2 901,463 - Xcc-8004.957.1 0.79 -0.7 901,739 + +0.5 901,739 + +0.1 901,739 + +0.6 901,794 + -0.6 901,923 - -2.1 901,985 + +0.3 902,179 - Xcc-8004.958.1 0.12 -0.2 902,410 + Xcc-8004.958.1 0.28 +0.1 902,488 + Xcc-8004.958.1 0.34 -0.4 902,489 - Xcc-8004.958.1 0.34 +0.4 902,584 - Xcc-8004.958.1 0.41 -0.9 902,584 - Xcc-8004.958.1 0.41 -0.1 902,663 + Xcc-8004.958.1 0.47 +0.1 902,663 + Xcc-8004.958.1 0.47 -0.5 902,664 - Xcc-8004.958.1 0.47 -0.4
Or see this region's nucleotide sequence