Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.954.1 and Xcc-8004.955.1 are separated by 10 nucleotides Xcc-8004.955.1 and Xcc-8004.956.1 are separated by 6 nucleotides
Xcc-8004.954.1: Xcc-8004.954.1 - N-acetyl glucosamine transporter, NagP, at 897,129 to 898,406
Xcc-8004.954.1
Xcc-8004.955.1: Xcc-8004.955.1 - Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family, at 898,417 to 899,514
Xcc-8004.955.1
Xcc-8004.956.1: Xcc-8004.956.1 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6), at 899,521 to 900,549
Xcc-8004.956.1
Position (kb) 898
899
900 Strain fitness (log2 ratio) -2
-1
0
1 at 897.504 kb on + strand, within Xcc-8004.954.1 at 897.504 kb on + strand, within Xcc-8004.954.1 at 897.505 kb on - strand, within Xcc-8004.954.1 at 897.505 kb on - strand, within Xcc-8004.954.1 at 897.567 kb on - strand, within Xcc-8004.954.1 at 897.714 kb on + strand, within Xcc-8004.954.1 at 897.714 kb on + strand, within Xcc-8004.954.1 at 897.715 kb on - strand, within Xcc-8004.954.1 at 897.715 kb on - strand, within Xcc-8004.954.1 at 897.889 kb on - strand, within Xcc-8004.954.1 at 897.889 kb on - strand, within Xcc-8004.954.1 at 897.930 kb on + strand, within Xcc-8004.954.1 at 897.982 kb on - strand, within Xcc-8004.954.1 at 898.009 kb on - strand, within Xcc-8004.954.1 at 898.009 kb on - strand, within Xcc-8004.954.1 at 898.119 kb on + strand, within Xcc-8004.954.1 at 898.120 kb on - strand, within Xcc-8004.954.1 at 898.300 kb on - strand at 898.300 kb on - strand at 898.300 kb on - strand at 898.348 kb on - strand at 898.348 kb on - strand at 898.360 kb on - strand at 898.447 kb on - strand at 898.955 kb on - strand, within Xcc-8004.955.1 at 899.053 kb on + strand, within Xcc-8004.955.1 at 899.116 kb on + strand, within Xcc-8004.955.1 at 899.116 kb on + strand, within Xcc-8004.955.1 at 899.117 kb on - strand, within Xcc-8004.955.1 at 899.117 kb on - strand, within Xcc-8004.955.1 at 899.254 kb on + strand, within Xcc-8004.955.1 at 899.395 kb on + strand, within Xcc-8004.955.1 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.705 kb on - strand, within Xcc-8004.956.1 at 899.713 kb on + strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.714 kb on - strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.776 kb on + strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.777 kb on - strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.809 kb on + strand, within Xcc-8004.956.1 at 899.810 kb on - strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.992 kb on + strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 899.993 kb on - strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.238 kb on + strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.239 kb on - strand, within Xcc-8004.956.1 at 900.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 897,504 + Xcc-8004.954.1 0.29 +0.8 897,504 + Xcc-8004.954.1 0.29 +0.0 897,505 - Xcc-8004.954.1 0.29 -0.4 897,505 - Xcc-8004.954.1 0.29 +0.6 897,567 - Xcc-8004.954.1 0.34 -2.0 897,714 + Xcc-8004.954.1 0.46 +1.3 897,714 + Xcc-8004.954.1 0.46 +0.4 897,715 - Xcc-8004.954.1 0.46 +0.8 897,715 - Xcc-8004.954.1 0.46 -1.2 897,889 - Xcc-8004.954.1 0.59 +0.4 897,889 - Xcc-8004.954.1 0.59 +0.5 897,930 + Xcc-8004.954.1 0.63 -0.9 897,982 - Xcc-8004.954.1 0.67 -0.6 898,009 - Xcc-8004.954.1 0.69 -0.1 898,009 - Xcc-8004.954.1 0.69 -0.4 898,119 + Xcc-8004.954.1 0.77 +0.5 898,120 - Xcc-8004.954.1 0.78 -1.2 898,300 - -0.3 898,300 - +1.0 898,300 - -0.6 898,348 - -0.9 898,348 - -0.0 898,360 - +0.9 898,447 - -0.9 898,955 - Xcc-8004.955.1 0.49 -1.1 899,053 + Xcc-8004.955.1 0.58 -1.4 899,116 + Xcc-8004.955.1 0.64 +0.2 899,116 + Xcc-8004.955.1 0.64 -0.8 899,117 - Xcc-8004.955.1 0.64 -0.9 899,117 - Xcc-8004.955.1 0.64 -0.5 899,254 + Xcc-8004.955.1 0.76 -0.5 899,395 + Xcc-8004.955.1 0.89 -1.4 899,705 - Xcc-8004.956.1 0.18 +0.0 899,705 - Xcc-8004.956.1 0.18 -0.6 899,713 + Xcc-8004.956.1 0.19 +0.2 899,714 - Xcc-8004.956.1 0.19 +1.7 899,714 - Xcc-8004.956.1 0.19 -0.6 899,776 + Xcc-8004.956.1 0.25 +1.6 899,776 + Xcc-8004.956.1 0.25 -0.2 899,777 - Xcc-8004.956.1 0.25 +0.6 899,777 - Xcc-8004.956.1 0.25 +0.6 899,777 - Xcc-8004.956.1 0.25 -1.2 899,777 - Xcc-8004.956.1 0.25 +0.3 899,809 + Xcc-8004.956.1 0.28 -0.6 899,809 + Xcc-8004.956.1 0.28 +0.7 899,810 - Xcc-8004.956.1 0.28 -0.5 899,992 + Xcc-8004.956.1 0.46 +0.7 899,992 + Xcc-8004.956.1 0.46 +0.2 899,993 - Xcc-8004.956.1 0.46 +0.5 899,993 - Xcc-8004.956.1 0.46 +0.1 899,993 - Xcc-8004.956.1 0.46 -0.2 899,993 - Xcc-8004.956.1 0.46 +0.7 900,238 + Xcc-8004.956.1 0.70 +0.1 900,238 + Xcc-8004.956.1 0.70 +0.7 900,238 + Xcc-8004.956.1 0.70 +0.8 900,239 - Xcc-8004.956.1 0.70 -0.7 900,239 - Xcc-8004.956.1 0.70 -0.4 900,502 - +0.2
Or see this region's nucleotide sequence