Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.950.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.948.1 and Xcc-8004.949.1 overlap by 4 nucleotidesXcc-8004.949.1 and Xcc-8004.950.1 overlap by 4 nucleotidesXcc-8004.950.1 and Xcc-8004.951.1 overlap by 4 nucleotidesXcc-8004.951.1 and Xcc-8004.952.1 overlap by 4 nucleotides Xcc-8004.948.1: Xcc-8004.948.1 - General secretion pathway protein J, at 892,184 to 892,783 Xcc-8004.948.1 Xcc-8004.949.1: Xcc-8004.949.1 - General secretion pathway protein K, at 892,780 to 893,772 Xcc-8004.949.1 Xcc-8004.950.1: Xcc-8004.950.1 - General secretion pathway protein L, at 893,769 to 894,833 Xcc-8004.950.1 Xcc-8004.951.1: Xcc-8004.951.1 - General secretion pathway protein M, at 894,830 to 895,282 Xcc-8004.951.1 Xcc-8004.952.1: Xcc-8004.952.1 - General secretion pathway protein N, at 895,279 to 895,995 Xcc-8004.952.1 Position (kb) 893 894 895Strain fitness (log2 ratio) -2 -1 0 1at 892.942 kb on + strand, within Xcc-8004.949.1at 892.943 kb on - strand, within Xcc-8004.949.1at 893.173 kb on + strand, within Xcc-8004.949.1at 893.173 kb on + strand, within Xcc-8004.949.1at 893.296 kb on + strand, within Xcc-8004.949.1at 893.297 kb on - strand, within Xcc-8004.949.1at 893.375 kb on - strand, within Xcc-8004.949.1at 893.508 kb on - strand, within Xcc-8004.949.1at 893.623 kb on + strand, within Xcc-8004.949.1at 893.623 kb on + strand, within Xcc-8004.949.1at 893.662 kb on + strand, within Xcc-8004.949.1at 893.711 kb on + strandat 893.711 kb on + strandat 893.712 kb on - strandat 893.712 kb on - strandat 893.712 kb on - strandat 894.666 kb on + strand, within Xcc-8004.950.1at 894.667 kb on - strand, within Xcc-8004.950.1at 894.939 kb on - strand, within Xcc-8004.951.1at 894.939 kb on - strand, within Xcc-8004.951.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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892,942 + Xcc-8004.949.1 0.16 -0.0
892,943 - Xcc-8004.949.1 0.16 -1.0
893,173 + Xcc-8004.949.1 0.40 -0.0
893,173 + Xcc-8004.949.1 0.40 -1.8
893,296 + Xcc-8004.949.1 0.52 -1.0
893,297 - Xcc-8004.949.1 0.52 -0.3
893,375 - Xcc-8004.949.1 0.60 -0.3
893,508 - Xcc-8004.949.1 0.73 +0.7
893,623 + Xcc-8004.949.1 0.85 -1.8
893,623 + Xcc-8004.949.1 0.85 -0.6
893,662 + Xcc-8004.949.1 0.89 +0.4
893,711 + +0.3
893,711 + +0.1
893,712 - -0.0
893,712 - +0.0
893,712 - -0.5
894,666 + Xcc-8004.950.1 0.84 -2.5
894,667 - Xcc-8004.950.1 0.84 -0.0
894,939 - Xcc-8004.951.1 0.24 -0.5
894,939 - Xcc-8004.951.1 0.24 +0.6

Or see this region's nucleotide sequence