Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.944.1 and Xcc-8004.945.1 are separated by 26 nucleotides Xcc-8004.945.1 and Xcc-8004.946.1 are separated by 9 nucleotides Xcc-8004.946.1 and Xcc-8004.947.1 overlap by 41 nucleotides Xcc-8004.947.1 and Xcc-8004.948.1 overlap by 1 nucleotides Xcc-8004.948.1 and Xcc-8004.949.1 overlap by 4 nucleotides
Xcc-8004.944.1: Xcc-8004.944.1 - General secretion pathway protein F, at 889,608 to 890,804
Xcc-8004.944.1
Xcc-8004.945.1: Xcc-8004.945.1 - General secretion pathway protein G, at 890,831 to 891,295
Xcc-8004.945.1
Xcc-8004.946.1: Xcc-8004.946.1 - General secretion pathway protein H, at 891,305 to 891,829
Xcc-8004.946.1
Xcc-8004.947.1: Xcc-8004.947.1 - General secretion pathway protein I, at 891,789 to 892,184
Xcc-8004.947.1
Xcc-8004.948.1: Xcc-8004.948.1 - General secretion pathway protein J, at 892,184 to 892,783
Xcc-8004.948.1
Xcc-8004.949.1: Xcc-8004.949.1 - General secretion pathway protein K, at 892,780 to 893,772
Xcc-8004.949.1
Position (kb) 891
892 Strain fitness (log2 ratio) -1
0
1 at 890.592 kb on + strand, within Xcc-8004.944.1 at 890.593 kb on - strand, within Xcc-8004.944.1 at 890.593 kb on - strand, within Xcc-8004.944.1 at 890.737 kb on + strand at 890.737 kb on + strand at 891.063 kb on - strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.146 kb on + strand, within Xcc-8004.945.1 at 891.227 kb on + strand, within Xcc-8004.945.1 at 891.227 kb on + strand, within Xcc-8004.945.1 at 891.228 kb on - strand, within Xcc-8004.945.1 at 891.228 kb on - strand, within Xcc-8004.945.1 at 891.411 kb on + strand, within Xcc-8004.946.1 at 891.587 kb on + strand, within Xcc-8004.946.1 at 891.587 kb on + strand, within Xcc-8004.946.1 at 891.643 kb on + strand, within Xcc-8004.946.1 at 892.175 kb on + strand at 892.360 kb on - strand, within Xcc-8004.948.1 at 892.360 kb on - strand, within Xcc-8004.948.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 890,592 + Xcc-8004.944.1 0.82 +0.0 890,593 - Xcc-8004.944.1 0.82 -1.4 890,593 - Xcc-8004.944.1 0.82 -1.4 890,737 + -0.8 890,737 + +0.8 891,063 - Xcc-8004.945.1 0.50 -0.2 891,146 + Xcc-8004.945.1 0.68 +0.1 891,146 + Xcc-8004.945.1 0.68 -0.4 891,146 + Xcc-8004.945.1 0.68 -0.4 891,146 + Xcc-8004.945.1 0.68 +0.6 891,227 + Xcc-8004.945.1 0.85 -0.2 891,227 + Xcc-8004.945.1 0.85 -0.5 891,228 - Xcc-8004.945.1 0.85 +0.1 891,228 - Xcc-8004.945.1 0.85 -0.7 891,411 + Xcc-8004.946.1 0.20 +0.8 891,587 + Xcc-8004.946.1 0.54 -0.3 891,587 + Xcc-8004.946.1 0.54 -1.3 891,643 + Xcc-8004.946.1 0.64 -0.6 892,175 + -0.3 892,360 - Xcc-8004.948.1 0.29 +0.1 892,360 - Xcc-8004.948.1 0.29 -0.9
Or see this region's nucleotide sequence