Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.926.1 and Xcc-8004.927.1 are separated by 122 nucleotides Xcc-8004.927.1 and Xcc-8004.929.1 are separated by 149 nucleotides
Xcc-8004.926.1: Xcc-8004.926.1 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 869,840 to 870,781
Xcc-8004.926.1
Xcc-8004.927.1: Xcc-8004.927.1 - Nucleoside-diphosphate-sugar epimerases, at 870,904 to 871,962
Xcc-8004.927.1
Xcc-8004.929.1: Xcc-8004.929.1 - Osmotically inducible protein OsmY, at 872,112 to 872,483
Xcc-8004.929.1
Position (kb) 870
871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 870.128 kb on + strand, within Xcc-8004.926.1 at 870.129 kb on - strand, within Xcc-8004.926.1 at 870.129 kb on - strand, within Xcc-8004.926.1 at 870.129 kb on - strand, within Xcc-8004.926.1 at 870.131 kb on + strand, within Xcc-8004.926.1 at 870.132 kb on - strand, within Xcc-8004.926.1 at 870.231 kb on - strand, within Xcc-8004.926.1 at 870.231 kb on - strand, within Xcc-8004.926.1 at 870.231 kb on - strand, within Xcc-8004.926.1 at 870.398 kb on + strand, within Xcc-8004.926.1 at 870.398 kb on + strand, within Xcc-8004.926.1 at 870.399 kb on - strand, within Xcc-8004.926.1 at 870.560 kb on + strand, within Xcc-8004.926.1 at 870.560 kb on + strand, within Xcc-8004.926.1 at 870.561 kb on - strand, within Xcc-8004.926.1 at 870.561 kb on - strand, within Xcc-8004.926.1 at 870.689 kb on - strand at 871.052 kb on + strand, within Xcc-8004.927.1 at 871.052 kb on + strand, within Xcc-8004.927.1 at 871.052 kb on + strand, within Xcc-8004.927.1 at 871.053 kb on - strand, within Xcc-8004.927.1 at 871.053 kb on - strand, within Xcc-8004.927.1 at 871.053 kb on - strand, within Xcc-8004.927.1 at 871.076 kb on - strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.223 kb on + strand, within Xcc-8004.927.1 at 871.224 kb on - strand, within Xcc-8004.927.1 at 871.224 kb on - strand, within Xcc-8004.927.1 at 871.224 kb on - strand, within Xcc-8004.927.1 at 871.331 kb on + strand, within Xcc-8004.927.1 at 871.331 kb on + strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.332 kb on - strand, within Xcc-8004.927.1 at 871.439 kb on + strand, within Xcc-8004.927.1 at 871.439 kb on + strand, within Xcc-8004.927.1 at 871.439 kb on + strand, within Xcc-8004.927.1 at 871.440 kb on - strand, within Xcc-8004.927.1 at 871.440 kb on - strand, within Xcc-8004.927.1 at 871.681 kb on - strand, within Xcc-8004.927.1 at 871.681 kb on - strand, within Xcc-8004.927.1 at 871.681 kb on - strand, within Xcc-8004.927.1 at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.922 kb on + strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.923 kb on - strand at 871.956 kb on + strand at 871.956 kb on + strand at 871.956 kb on + strand at 871.956 kb on + strand at 872.003 kb on + strand at 872.003 kb on + strand at 872.003 kb on + strand at 872.003 kb on + strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.004 kb on - strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.481 kb on + strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.482 kb on - strand at 872.546 kb on + strand at 872.546 kb on + strand at 872.818 kb on + strand at 872.819 kb on - strand at 872.819 kb on - strand at 872.828 kb on + strand at 872.829 kb on - strand at 872.829 kb on - strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.894 kb on + strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.895 kb on - strand at 872.899 kb on + strand at 872.900 kb on - strand at 872.914 kb on - strand at 872.914 kb on - strand at 872.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 870,128 + Xcc-8004.926.1 0.31 +1.0 870,129 - Xcc-8004.926.1 0.31 -1.3 870,129 - Xcc-8004.926.1 0.31 +1.1 870,129 - Xcc-8004.926.1 0.31 -0.2 870,131 + Xcc-8004.926.1 0.31 +1.5 870,132 - Xcc-8004.926.1 0.31 -1.9 870,231 - Xcc-8004.926.1 0.42 -0.5 870,231 - Xcc-8004.926.1 0.42 +1.4 870,231 - Xcc-8004.926.1 0.42 +1.6 870,398 + Xcc-8004.926.1 0.59 -0.7 870,398 + Xcc-8004.926.1 0.59 -0.7 870,399 - Xcc-8004.926.1 0.59 -0.2 870,560 + Xcc-8004.926.1 0.76 -0.1 870,560 + Xcc-8004.926.1 0.76 -0.6 870,561 - Xcc-8004.926.1 0.77 +0.6 870,561 - Xcc-8004.926.1 0.77 +0.3 870,689 - -0.5 871,052 + Xcc-8004.927.1 0.14 +0.7 871,052 + Xcc-8004.927.1 0.14 +0.1 871,052 + Xcc-8004.927.1 0.14 -0.5 871,053 - Xcc-8004.927.1 0.14 -0.5 871,053 - Xcc-8004.927.1 0.14 -0.2 871,053 - Xcc-8004.927.1 0.14 -0.7 871,076 - Xcc-8004.927.1 0.16 -1.8 871,223 + Xcc-8004.927.1 0.30 +1.0 871,223 + Xcc-8004.927.1 0.30 -0.3 871,223 + Xcc-8004.927.1 0.30 +0.3 871,223 + Xcc-8004.927.1 0.30 +1.1 871,224 - Xcc-8004.927.1 0.30 +0.2 871,224 - Xcc-8004.927.1 0.30 -0.0 871,224 - Xcc-8004.927.1 0.30 +1.0 871,331 + Xcc-8004.927.1 0.40 +0.8 871,331 + Xcc-8004.927.1 0.40 +0.1 871,332 - Xcc-8004.927.1 0.40 +1.0 871,332 - Xcc-8004.927.1 0.40 -0.8 871,332 - Xcc-8004.927.1 0.40 -2.3 871,332 - Xcc-8004.927.1 0.40 +0.7 871,439 + Xcc-8004.927.1 0.51 +1.0 871,439 + Xcc-8004.927.1 0.51 -0.2 871,439 + Xcc-8004.927.1 0.51 +0.6 871,440 - Xcc-8004.927.1 0.51 -0.9 871,440 - Xcc-8004.927.1 0.51 +0.5 871,681 - Xcc-8004.927.1 0.73 -0.0 871,681 - Xcc-8004.927.1 0.73 -1.2 871,681 - Xcc-8004.927.1 0.73 -0.4 871,922 + +0.5 871,922 + +1.1 871,922 + +0.8 871,922 + +1.5 871,922 + -0.2 871,922 + +0.2 871,922 + -2.9 871,922 + -1.6 871,922 + -0.3 871,923 - +0.6 871,923 - +0.7 871,923 - -0.1 871,923 - +0.1 871,923 - -1.9 871,923 - -0.6 871,923 - +0.5 871,923 - -2.1 871,923 - -0.1 871,923 - -0.9 871,923 - +0.7 871,956 + -0.9 871,956 + -2.8 871,956 + -0.3 871,956 + -0.4 872,003 + -0.3 872,003 + -1.2 872,003 + +0.4 872,003 + +1.0 872,004 - +0.4 872,004 - -0.1 872,004 - +1.1 872,004 - -0.6 872,004 - -0.9 872,481 + +0.7 872,481 + +0.2 872,481 + +0.3 872,481 + +0.0 872,481 + -2.2 872,481 + +0.2 872,481 + -0.3 872,481 + -0.8 872,481 + -0.2 872,481 + +1.0 872,481 + +0.6 872,481 + -1.5 872,481 + -0.0 872,481 + -0.4 872,482 - -1.8 872,482 - +0.7 872,482 - +0.6 872,482 - +0.8 872,482 - +0.3 872,482 - -0.1 872,482 - +0.1 872,482 - +0.6 872,482 - +0.7 872,482 - -2.0 872,482 - -0.0 872,482 - -0.8 872,482 - +0.7 872,546 + +0.4 872,546 + +0.5 872,818 + -1.1 872,819 - +0.0 872,819 - +0.6 872,828 + -1.3 872,829 - -0.6 872,829 - +0.9 872,894 + -1.0 872,894 + -0.9 872,894 + +0.1 872,894 + -1.0 872,894 + -0.1 872,894 + +0.2 872,894 + -0.7 872,894 + +0.1 872,895 - -1.6 872,895 - -1.2 872,895 - +0.0 872,895 - +1.0 872,895 - -0.8 872,895 - -0.2 872,895 - -1.0 872,895 - +0.8 872,895 - +0.5 872,895 - -0.1 872,899 + -0.8 872,900 - -1.2 872,914 - +0.6 872,914 - +0.7 872,914 - +0.7
Or see this region's nucleotide sequence