Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.925.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.923.1 and Xcc-8004.924.1 are separated by 125 nucleotidesXcc-8004.924.1 and Xcc-8004.925.1 are separated by 83 nucleotidesXcc-8004.925.1 and Xcc-8004.926.1 are separated by 22 nucleotides Xcc-8004.923.1: Xcc-8004.923.1 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 866,973 to 867,836 Xcc-8004.923.1 Xcc-8004.924.1: Xcc-8004.924.1 - FIG01200701: possible membrane protein, at 867,962 to 868,339 Xcc-8004.924.1 Xcc-8004.925.1: Xcc-8004.925.1 - FIG01210026: hypothetical protein, at 868,423 to 869,817 Xcc-8004.925.1 Xcc-8004.926.1: Xcc-8004.926.1 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 869,840 to 870,781 Xcc-8004.926.1 Position (kb) 868 869 870Strain fitness (log2 ratio) -2 -1 0 1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.564 kb on + strand, within Xcc-8004.923.1at 867.564 kb on + strand, within Xcc-8004.923.1at 867.891 kb on + strandat 867.891 kb on + strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.905 kb on + strandat 867.905 kb on + strandat 867.906 kb on - strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.988 kb on + strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 867.989 kb on - strandat 868.040 kb on + strand, within Xcc-8004.924.1at 868.055 kb on + strand, within Xcc-8004.924.1at 868.411 kb on + strandat 868.411 kb on + strandat 868.411 kb on + strandat 868.412 kb on - strandat 868.412 kb on - strandat 868.412 kb on - strandat 868.412 kb on - strandat 868.689 kb on + strand, within Xcc-8004.925.1at 868.689 kb on + strand, within Xcc-8004.925.1at 868.689 kb on + strand, within Xcc-8004.925.1at 868.689 kb on + strand, within Xcc-8004.925.1at 868.819 kb on + strand, within Xcc-8004.925.1at 868.978 kb on + strand, within Xcc-8004.925.1at 868.979 kb on - strand, within Xcc-8004.925.1at 869.020 kb on + strand, within Xcc-8004.925.1at 869.021 kb on - strand, within Xcc-8004.925.1at 869.021 kb on - strand, within Xcc-8004.925.1at 869.093 kb on - strand, within Xcc-8004.925.1at 869.093 kb on - strand, within Xcc-8004.925.1at 869.112 kb on + strand, within Xcc-8004.925.1at 869.299 kb on + strand, within Xcc-8004.925.1at 869.299 kb on + strand, within Xcc-8004.925.1at 869.300 kb on - strand, within Xcc-8004.925.1at 869.395 kb on + strand, within Xcc-8004.925.1at 869.395 kb on + strand, within Xcc-8004.925.1at 869.398 kb on + strand, within Xcc-8004.925.1at 869.398 kb on + strand, within Xcc-8004.925.1at 869.398 kb on + strand, within Xcc-8004.925.1at 869.399 kb on - strand, within Xcc-8004.925.1at 869.399 kb on - strand, within Xcc-8004.925.1at 869.479 kb on + strand, within Xcc-8004.925.1at 869.480 kb on - strand, within Xcc-8004.925.1at 869.480 kb on - strand, within Xcc-8004.925.1at 869.569 kb on + strand, within Xcc-8004.925.1at 869.569 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.587 kb on + strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.588 kb on - strand, within Xcc-8004.925.1at 869.662 kb on + strand, within Xcc-8004.925.1at 869.705 kb on - strandat 869.705 kb on - strandat 869.705 kb on - strandat 869.792 kb on - strandat 869.839 kb on + strandat 869.839 kb on + strandat 869.839 kb on + strandat 869.840 kb on - strandat 869.840 kb on - strandat 869.852 kb on - strandat 869.852 kb on - strandat 870.128 kb on + strand, within Xcc-8004.926.1at 870.129 kb on - strand, within Xcc-8004.926.1at 870.129 kb on - strand, within Xcc-8004.926.1at 870.129 kb on - strand, within Xcc-8004.926.1at 870.131 kb on + strand, within Xcc-8004.926.1at 870.132 kb on - strand, within Xcc-8004.926.1at 870.231 kb on - strand, within Xcc-8004.926.1at 870.231 kb on - strand, within Xcc-8004.926.1at 870.231 kb on - strand, within Xcc-8004.926.1at 870.398 kb on + strand, within Xcc-8004.926.1at 870.398 kb on + strand, within Xcc-8004.926.1at 870.399 kb on - strand, within Xcc-8004.926.1at 870.560 kb on + strand, within Xcc-8004.926.1at 870.560 kb on + strand, within Xcc-8004.926.1at 870.561 kb on - strand, within Xcc-8004.926.1at 870.561 kb on - strand, within Xcc-8004.926.1at 870.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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867,534 + Xcc-8004.923.1 0.65 -2.1
867,534 + Xcc-8004.923.1 0.65 -0.5
867,534 + Xcc-8004.923.1 0.65 +0.5
867,535 - Xcc-8004.923.1 0.65 +1.2
867,535 - Xcc-8004.923.1 0.65 +1.1
867,535 - Xcc-8004.923.1 0.65 +1.0
867,535 - Xcc-8004.923.1 0.65 +0.8
867,564 + Xcc-8004.923.1 0.68 +0.0
867,564 + Xcc-8004.923.1 0.68 +0.1
867,891 + -1.2
867,891 + -0.2
867,892 - +0.4
867,892 - +0.1
867,892 - -1.2
867,892 - -0.1
867,905 + +0.3
867,905 + +0.7
867,906 - -0.7
867,958 + -1.3
867,958 + -1.7
867,958 + +0.2
867,958 + +0.0
867,958 + -0.1
867,958 + -0.3
867,958 + -1.0
867,958 + +0.9
867,959 - +0.9
867,959 - -0.2
867,959 - +0.9
867,959 - +0.2
867,988 + -0.2
867,988 + +1.7
867,988 + -0.1
867,988 + +1.2
867,988 + +0.4
867,988 + -0.9
867,989 - -0.8
867,989 - +0.2
867,989 - +1.6
867,989 - -0.4
867,989 - +0.3
867,989 - +0.5
867,989 - +0.5
867,989 - -0.0
867,989 - -0.2
867,989 - +0.8
867,989 - +0.7
868,040 + Xcc-8004.924.1 0.21 -1.2
868,055 + Xcc-8004.924.1 0.25 -0.6
868,411 + +0.1
868,411 + +0.1
868,411 + -0.4
868,412 - +0.7
868,412 - +0.2
868,412 - +0.7
868,412 - +1.7
868,689 + Xcc-8004.925.1 0.19 +0.3
868,689 + Xcc-8004.925.1 0.19 -0.7
868,689 + Xcc-8004.925.1 0.19 -0.6
868,689 + Xcc-8004.925.1 0.19 -1.9
868,819 + Xcc-8004.925.1 0.28 +1.1
868,978 + Xcc-8004.925.1 0.40 -0.4
868,979 - Xcc-8004.925.1 0.40 -0.3
869,020 + Xcc-8004.925.1 0.43 -2.0
869,021 - Xcc-8004.925.1 0.43 -0.9
869,021 - Xcc-8004.925.1 0.43 +0.7
869,093 - Xcc-8004.925.1 0.48 -0.7
869,093 - Xcc-8004.925.1 0.48 -0.1
869,112 + Xcc-8004.925.1 0.49 +0.8
869,299 + Xcc-8004.925.1 0.63 +0.7
869,299 + Xcc-8004.925.1 0.63 -0.4
869,300 - Xcc-8004.925.1 0.63 -0.1
869,395 + Xcc-8004.925.1 0.70 -0.2
869,395 + Xcc-8004.925.1 0.70 -0.3
869,398 + Xcc-8004.925.1 0.70 -0.6
869,398 + Xcc-8004.925.1 0.70 +0.2
869,398 + Xcc-8004.925.1 0.70 -0.3
869,399 - Xcc-8004.925.1 0.70 +0.8
869,399 - Xcc-8004.925.1 0.70 -0.0
869,479 + Xcc-8004.925.1 0.76 +0.5
869,480 - Xcc-8004.925.1 0.76 -0.0
869,480 - Xcc-8004.925.1 0.76 +0.4
869,569 + Xcc-8004.925.1 0.82 -0.0
869,569 + Xcc-8004.925.1 0.82 +0.0
869,587 + Xcc-8004.925.1 0.83 -0.3
869,587 + Xcc-8004.925.1 0.83 -1.2
869,587 + Xcc-8004.925.1 0.83 -1.1
869,587 + Xcc-8004.925.1 0.83 -1.3
869,587 + Xcc-8004.925.1 0.83 -0.6
869,587 + Xcc-8004.925.1 0.83 -0.2
869,587 + Xcc-8004.925.1 0.83 -0.3
869,588 - Xcc-8004.925.1 0.84 -0.9
869,588 - Xcc-8004.925.1 0.84 +0.1
869,588 - Xcc-8004.925.1 0.84 +0.2
869,588 - Xcc-8004.925.1 0.84 -0.3
869,662 + Xcc-8004.925.1 0.89 -0.6
869,705 - -0.3
869,705 - +0.2
869,705 - -0.6
869,792 - -0.5
869,839 + -2.2
869,839 + -0.9
869,839 + +0.2
869,840 - -0.2
869,840 - -0.1
869,852 - +0.6
869,852 - +0.6
870,128 + Xcc-8004.926.1 0.31 +1.0
870,129 - Xcc-8004.926.1 0.31 -1.3
870,129 - Xcc-8004.926.1 0.31 +1.1
870,129 - Xcc-8004.926.1 0.31 -0.2
870,131 + Xcc-8004.926.1 0.31 +1.5
870,132 - Xcc-8004.926.1 0.31 -1.9
870,231 - Xcc-8004.926.1 0.42 -0.5
870,231 - Xcc-8004.926.1 0.42 +1.4
870,231 - Xcc-8004.926.1 0.42 +1.6
870,398 + Xcc-8004.926.1 0.59 -0.7
870,398 + Xcc-8004.926.1 0.59 -0.7
870,399 - Xcc-8004.926.1 0.59 -0.2
870,560 + Xcc-8004.926.1 0.76 -0.1
870,560 + Xcc-8004.926.1 0.76 -0.6
870,561 - Xcc-8004.926.1 0.77 +0.6
870,561 - Xcc-8004.926.1 0.77 +0.3
870,689 - -0.5

Or see this region's nucleotide sequence