Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.914.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.913.1 and Xcc-8004.914.1 are separated by 223 nucleotidesXcc-8004.914.1 and Xcc-8004.915.1 are separated by 110 nucleotidesXcc-8004.915.1 and Xcc-8004.916.1 are separated by 88 nucleotides Xcc-8004.913.1: Xcc-8004.913.1 - Lipoate synthase, at 855,878 to 856,891 Xcc-8004.913.1 Xcc-8004.914.1: Xcc-8004.914.1 - tail-specific protease, at 857,115 to 859,298 Xcc-8004.914.1 Xcc-8004.915.1: Xcc-8004.915.1 - membrane protein, putative, at 859,409 to 860,152 Xcc-8004.915.1 Xcc-8004.916.1: Xcc-8004.916.1 - transcriptional regulator, at 860,241 to 861,146 Xcc-8004.916.1 Position (kb) 857 858 859 860Strain fitness (log2 ratio) -3 -2 -1 0 1at 856.972 kb on - strandat 856.993 kb on + strandat 856.993 kb on + strandat 856.993 kb on + strandat 856.993 kb on + strandat 856.993 kb on + strandat 856.994 kb on - strandat 856.994 kb on - strandat 856.994 kb on - strandat 856.994 kb on - strandat 856.994 kb on - strandat 856.994 kb on - strandat 857.007 kb on + strandat 857.007 kb on + strandat 857.008 kb on - strandat 857.008 kb on - strandat 857.121 kb on + strandat 857.121 kb on + strandat 857.121 kb on + strandat 857.121 kb on + strandat 857.121 kb on + strandat 857.121 kb on + strandat 857.121 kb on + strandat 857.122 kb on - strandat 857.122 kb on - strandat 857.122 kb on - strandat 857.256 kb on + strandat 857.257 kb on - strandat 857.257 kb on - strandat 857.280 kb on + strandat 857.472 kb on + strand, within Xcc-8004.914.1at 857.472 kb on + strand, within Xcc-8004.914.1at 857.502 kb on + strand, within Xcc-8004.914.1at 857.700 kb on + strand, within Xcc-8004.914.1at 857.769 kb on + strand, within Xcc-8004.914.1at 857.769 kb on + strand, within Xcc-8004.914.1at 857.769 kb on + strand, within Xcc-8004.914.1at 857.769 kb on + strand, within Xcc-8004.914.1at 857.770 kb on - strand, within Xcc-8004.914.1at 857.799 kb on + strand, within Xcc-8004.914.1at 857.799 kb on + strand, within Xcc-8004.914.1at 857.800 kb on - strand, within Xcc-8004.914.1at 858.075 kb on + strand, within Xcc-8004.914.1at 858.075 kb on + strand, within Xcc-8004.914.1at 858.075 kb on + strand, within Xcc-8004.914.1at 858.075 kb on + strand, within Xcc-8004.914.1at 858.075 kb on + strand, within Xcc-8004.914.1at 858.076 kb on - strand, within Xcc-8004.914.1at 858.076 kb on - strand, within Xcc-8004.914.1at 858.240 kb on + strand, within Xcc-8004.914.1at 858.240 kb on + strand, within Xcc-8004.914.1at 858.240 kb on + strand, within Xcc-8004.914.1at 858.240 kb on + strand, within Xcc-8004.914.1at 858.279 kb on + strand, within Xcc-8004.914.1at 858.279 kb on + strand, within Xcc-8004.914.1at 858.279 kb on + strand, within Xcc-8004.914.1at 858.280 kb on - strand, within Xcc-8004.914.1at 858.280 kb on - strand, within Xcc-8004.914.1at 858.280 kb on - strand, within Xcc-8004.914.1at 858.573 kb on + strand, within Xcc-8004.914.1at 858.672 kb on + strand, within Xcc-8004.914.1at 858.801 kb on + strand, within Xcc-8004.914.1at 858.801 kb on + strand, within Xcc-8004.914.1at 858.801 kb on + strand, within Xcc-8004.914.1at 858.802 kb on - strand, within Xcc-8004.914.1at 858.979 kb on - strand, within Xcc-8004.914.1at 859.258 kb on + strandat 859.258 kb on + strandat 859.258 kb on + strandat 859.259 kb on - strandat 859.259 kb on - strandat 859.492 kb on + strand, within Xcc-8004.915.1at 859.492 kb on + strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.550 kb on + strand, within Xcc-8004.915.1at 859.551 kb on - strand, within Xcc-8004.915.1at 859.686 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.822 kb on - strand, within Xcc-8004.915.1at 859.822 kb on - strand, within Xcc-8004.915.1at 859.931 kb on + strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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856,972 - -1.2
856,993 + +0.6
856,993 + -0.8
856,993 + -0.4
856,993 + -0.7
856,993 + -0.2
856,994 - +0.0
856,994 - -0.1
856,994 - +0.4
856,994 - -0.9
856,994 - -0.4
856,994 - -1.5
857,007 + +0.4
857,007 + +0.6
857,008 - +0.7
857,008 - +0.4
857,121 + +0.4
857,121 + -1.6
857,121 + -2.2
857,121 + -0.1
857,121 + -1.6
857,121 + -1.6
857,121 + +1.7
857,122 - -1.6
857,122 - -1.1
857,122 - +0.8
857,256 + -2.0
857,257 - -0.8
857,257 - -1.3
857,280 + -2.7
857,472 + Xcc-8004.914.1 0.16 -1.9
857,472 + Xcc-8004.914.1 0.16 -0.9
857,502 + Xcc-8004.914.1 0.18 -1.0
857,700 + Xcc-8004.914.1 0.27 -1.1
857,769 + Xcc-8004.914.1 0.30 -2.5
857,769 + Xcc-8004.914.1 0.30 -1.3
857,769 + Xcc-8004.914.1 0.30 +0.3
857,769 + Xcc-8004.914.1 0.30 -2.7
857,770 - Xcc-8004.914.1 0.30 -2.2
857,799 + Xcc-8004.914.1 0.31 -1.5
857,799 + Xcc-8004.914.1 0.31 +0.5
857,800 - Xcc-8004.914.1 0.31 -1.6
858,075 + Xcc-8004.914.1 0.44 -2.3
858,075 + Xcc-8004.914.1 0.44 -2.9
858,075 + Xcc-8004.914.1 0.44 +0.5
858,075 + Xcc-8004.914.1 0.44 +0.0
858,075 + Xcc-8004.914.1 0.44 -1.2
858,076 - Xcc-8004.914.1 0.44 -1.9
858,076 - Xcc-8004.914.1 0.44 -1.6
858,240 + Xcc-8004.914.1 0.52 -1.5
858,240 + Xcc-8004.914.1 0.52 -0.8
858,240 + Xcc-8004.914.1 0.52 -0.5
858,240 + Xcc-8004.914.1 0.52 -1.6
858,279 + Xcc-8004.914.1 0.53 -1.3
858,279 + Xcc-8004.914.1 0.53 -2.5
858,279 + Xcc-8004.914.1 0.53 -1.2
858,280 - Xcc-8004.914.1 0.53 +0.1
858,280 - Xcc-8004.914.1 0.53 -0.5
858,280 - Xcc-8004.914.1 0.53 -0.6
858,573 + Xcc-8004.914.1 0.67 -0.4
858,672 + Xcc-8004.914.1 0.71 -1.3
858,801 + Xcc-8004.914.1 0.77 -2.1
858,801 + Xcc-8004.914.1 0.77 -2.1
858,801 + Xcc-8004.914.1 0.77 -3.1
858,802 - Xcc-8004.914.1 0.77 -0.7
858,979 - Xcc-8004.914.1 0.85 -0.6
859,258 + +0.2
859,258 + -1.4
859,258 + -1.9
859,259 - -0.9
859,259 - -1.1
859,492 + Xcc-8004.915.1 0.11 +0.5
859,492 + Xcc-8004.915.1 0.11 +0.2
859,493 - Xcc-8004.915.1 0.11 +0.2
859,493 - Xcc-8004.915.1 0.11 -0.5
859,493 - Xcc-8004.915.1 0.11 +0.1
859,493 - Xcc-8004.915.1 0.11 -1.8
859,493 - Xcc-8004.915.1 0.11 -0.4
859,493 - Xcc-8004.915.1 0.11 +0.3
859,550 + Xcc-8004.915.1 0.19 +0.2
859,551 - Xcc-8004.915.1 0.19 -0.1
859,686 + Xcc-8004.915.1 0.37 +0.8
859,821 + Xcc-8004.915.1 0.55 -0.1
859,821 + Xcc-8004.915.1 0.55 -0.0
859,821 + Xcc-8004.915.1 0.55 +0.0
859,821 + Xcc-8004.915.1 0.55 +0.1
859,821 + Xcc-8004.915.1 0.55 +0.5
859,822 - Xcc-8004.915.1 0.56 -0.8
859,822 - Xcc-8004.915.1 0.56 +0.6
859,931 + Xcc-8004.915.1 0.70 +0.7
859,932 - Xcc-8004.915.1 0.70 -1.1
859,932 - Xcc-8004.915.1 0.70 +0.3
859,932 - Xcc-8004.915.1 0.70 -0.7
859,932 - Xcc-8004.915.1 0.70 -0.1
859,932 - Xcc-8004.915.1 0.70 +0.7

Or see this region's nucleotide sequence