Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.889.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.887.1 and Xcc-8004.889.1 are separated by 396 nucleotidesXcc-8004.889.1 and Xcc-8004.890.1 are separated by 48 nucleotidesXcc-8004.890.1 and Xcc-8004.891.1 overlap by 7 nucleotides Xcc-8004.887.1: Xcc-8004.887.1 - Rod shape-determining protein RodA, at 835,292 to 836,410 Xcc-8004.887.1 Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520 Xcc-8004.889.1 Xcc-8004.890.1: Xcc-8004.890.1 - Mobile element protein, at 837,569 to 837,832 Xcc-8004.890.1 Xcc-8004.891.1: Xcc-8004.891.1 - Mobile element protein, at 837,826 to 838,671 Xcc-8004.891.1 Xcc-8004.892.1: Xcc-8004.892.1 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 838,503 to 839,714 Xcc-8004.892.1 Position (kb) 836 837 838Strain fitness (log2 ratio) -2 -1 0 1at 836.434 kb on + strandat 836.506 kb on + strandat 836.507 kb on - strandat 836.519 kb on - strandat 836.519 kb on - strandat 836.528 kb on - strandat 836.537 kb on - strandat 836.713 kb on - strandat 836.713 kb on - strandat 836.747 kb on + strandat 836.764 kb on + strandat 836.764 kb on + strandat 836.816 kb on - strandat 836.816 kb on - strandat 836.946 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.013 kb on - strand, within Xcc-8004.889.1at 837.422 kb on + strand, within Xcc-8004.889.1at 837.422 kb on + strand, within Xcc-8004.889.1at 837.423 kb on - strand, within Xcc-8004.889.1at 837.423 kb on - strand, within Xcc-8004.889.1at 837.423 kb on - strand, within Xcc-8004.889.1at 837.424 kb on + strand, within Xcc-8004.889.1at 837.425 kb on - strand, within Xcc-8004.889.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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836,434 + -0.0
836,506 + +0.5
836,507 - +0.4
836,519 - -1.0
836,519 - +0.7
836,528 - -0.5
836,537 - +0.8
836,713 - +0.4
836,713 - -0.1
836,747 + +0.9
836,764 + -1.8
836,764 + +0.2
836,816 - -0.8
836,816 - -2.0
836,946 - Xcc-8004.889.1 0.19 -0.6
837,013 - Xcc-8004.889.1 0.29 -0.0
837,013 - Xcc-8004.889.1 0.29 -0.1
837,013 - Xcc-8004.889.1 0.29 +0.2
837,422 + Xcc-8004.889.1 0.86 +0.3
837,422 + Xcc-8004.889.1 0.86 -0.8
837,423 - Xcc-8004.889.1 0.86 +0.5
837,423 - Xcc-8004.889.1 0.86 +0.1
837,423 - Xcc-8004.889.1 0.86 -0.7
837,424 + Xcc-8004.889.1 0.86 -0.3
837,425 - Xcc-8004.889.1 0.87 -1.5

Or see this region's nucleotide sequence