Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.844.1 and Xcc-8004.845.1 overlap by 11 nucleotides Xcc-8004.845.1 and Xcc-8004.846.1 overlap by 4 nucleotides Xcc-8004.846.1 and Xcc-8004.847.1 overlap by 8 nucleotides
Xcc-8004.844.1: Xcc-8004.844.1 - FIG01210600: hypothetical protein, at 796,354 to 796,611
Xcc-8004.844.1
Xcc-8004.845.1: Xcc-8004.845.1 - Diaminopimelate epimerase (EC 5.1.1.7), at 796,601 to 797,455
Xcc-8004.845.1
Xcc-8004.846.1: Xcc-8004.846.1 - Protein of unknown function DUF484, at 797,452 to 798,120
Xcc-8004.846.1
Xcc-8004.847.1: Xcc-8004.847.1 - Site-specific tyrosine recombinase, at 798,113 to 799,081
Xcc-8004.847.1
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1 at 797.593 kb on + strand, within Xcc-8004.846.1 at 797.948 kb on - strand, within Xcc-8004.846.1 at 797.948 kb on - strand, within Xcc-8004.846.1 at 797.948 kb on - strand, within Xcc-8004.846.1 at 798.025 kb on - strand, within Xcc-8004.846.1 at 798.043 kb on + strand, within Xcc-8004.846.1 at 798.043 kb on + strand, within Xcc-8004.846.1 at 798.057 kb on + strand at 798.057 kb on + strand at 798.057 kb on + strand at 798.058 kb on - strand at 798.429 kb on - strand, within Xcc-8004.847.1 at 798.608 kb on + strand, within Xcc-8004.847.1 at 798.998 kb on + strand at 798.998 kb on + strand at 798.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 797,593 + Xcc-8004.846.1 0.21 +0.1 797,948 - Xcc-8004.846.1 0.74 -2.1 797,948 - Xcc-8004.846.1 0.74 -1.1 797,948 - Xcc-8004.846.1 0.74 -0.9 798,025 - Xcc-8004.846.1 0.86 -0.1 798,043 + Xcc-8004.846.1 0.88 -0.9 798,043 + Xcc-8004.846.1 0.88 +0.1 798,057 + +0.9 798,057 + -0.5 798,057 + +0.3 798,058 - -0.7 798,429 - Xcc-8004.847.1 0.33 +0.1 798,608 + Xcc-8004.847.1 0.51 +1.7 798,998 + -1.6 798,998 + -0.7 798,999 - +0.1
Or see this region's nucleotide sequence