Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.657.1 and Xcc-8004.658.1 are separated by 4 nucleotides Xcc-8004.658.1 and Xcc-8004.659.1 are separated by 8 nucleotides Xcc-8004.659.1 and Xcc-8004.661.1 are separated by 57 nucleotides Xcc-8004.661.1 and Xcc-8004.662.1 are separated by 54 nucleotides
Xcc-8004.657.1: Xcc-8004.657.1 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 599,893 to 601,188
Xcc-8004.657.1
Xcc-8004.658.1: Xcc-8004.658.1 - FIG01211216: hypothetical protein, at 601,193 to 601,891
Xcc-8004.658.1
Xcc-8004.659.1: Xcc-8004.659.1 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 601,900 to 603,483
Xcc-8004.659.1
Xcc-8004.661.1: Xcc-8004.661.1 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5), at 603,541 to 604,173
Xcc-8004.661.1
Xcc-8004.662.1: Xcc-8004.662.1 - Putative lipase in cluster with Phosphatidate cytidylyltransferase, at 604,228 to 605,991
Xcc-8004.662.1
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 601.195 kb on - strand at 601.217 kb on + strand at 601.217 kb on + strand at 601.218 kb on - strand at 601.218 kb on - strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.222 kb on + strand at 601.223 kb on - strand at 601.223 kb on - strand at 601.223 kb on - strand at 601.251 kb on - strand at 601.264 kb on + strand, within Xcc-8004.658.1 at 601.264 kb on + strand, within Xcc-8004.658.1 at 601.265 kb on - strand, within Xcc-8004.658.1 at 601.345 kb on - strand, within Xcc-8004.658.1 at 601.358 kb on - strand, within Xcc-8004.658.1 at 601.370 kb on + strand, within Xcc-8004.658.1 at 601.371 kb on - strand, within Xcc-8004.658.1 at 601.371 kb on - strand, within Xcc-8004.658.1 at 601.396 kb on - strand, within Xcc-8004.658.1 at 601.396 kb on - strand, within Xcc-8004.658.1 at 601.396 kb on - strand, within Xcc-8004.658.1 at 601.405 kb on + strand, within Xcc-8004.658.1 at 601.405 kb on + strand, within Xcc-8004.658.1 at 601.474 kb on + strand, within Xcc-8004.658.1 at 601.500 kb on - strand, within Xcc-8004.658.1 at 601.500 kb on - strand, within Xcc-8004.658.1 at 601.500 kb on - strand, within Xcc-8004.658.1 at 601.553 kb on + strand, within Xcc-8004.658.1 at 601.553 kb on + strand, within Xcc-8004.658.1 at 601.553 kb on + strand, within Xcc-8004.658.1 at 601.554 kb on - strand, within Xcc-8004.658.1 at 601.554 kb on - strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.584 kb on + strand, within Xcc-8004.658.1 at 601.630 kb on + strand, within Xcc-8004.658.1 at 601.631 kb on - strand, within Xcc-8004.658.1 at 601.631 kb on - strand, within Xcc-8004.658.1 at 601.658 kb on - strand, within Xcc-8004.658.1 at 601.659 kb on + strand, within Xcc-8004.658.1 at 601.660 kb on - strand, within Xcc-8004.658.1 at 601.829 kb on + strand at 601.830 kb on - strand at 601.863 kb on - strand at 601.865 kb on + strand at 601.865 kb on + strand at 601.865 kb on + strand at 601.866 kb on - strand at 601.866 kb on - strand at 601.885 kb on + strand at 601.886 kb on - strand at 601.886 kb on - strand at 602.092 kb on - strand, within Xcc-8004.659.1 at 602.189 kb on + strand, within Xcc-8004.659.1 at 602.190 kb on - strand, within Xcc-8004.659.1 at 602.444 kb on + strand, within Xcc-8004.659.1 at 602.576 kb on + strand, within Xcc-8004.659.1 at 602.576 kb on + strand, within Xcc-8004.659.1 at 602.576 kb on + strand, within Xcc-8004.659.1 at 602.859 kb on + strand, within Xcc-8004.659.1 at 602.903 kb on + strand, within Xcc-8004.659.1 at 602.904 kb on - strand, within Xcc-8004.659.1 at 603.024 kb on - strand, within Xcc-8004.659.1 at 603.024 kb on - strand, within Xcc-8004.659.1 at 603.521 kb on + strand at 603.521 kb on + strand at 603.521 kb on + strand at 603.521 kb on + strand at 603.522 kb on - strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.571 kb on + strand at 603.572 kb on - strand at 603.572 kb on - strand at 603.572 kb on - strand at 603.572 kb on - strand at 603.700 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.730 kb on + strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.731 kb on - strand, within Xcc-8004.661.1 at 603.829 kb on + strand, within Xcc-8004.661.1 at 603.872 kb on - strand, within Xcc-8004.661.1 at 603.992 kb on - strand, within Xcc-8004.661.1 at 604.241 kb on + strand at 604.241 kb on + strand at 604.241 kb on + strand at 604.242 kb on - strand at 604.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 601,195 - -0.9 601,217 + +0.6 601,217 + -1.3 601,218 - +0.1 601,218 - -0.7 601,222 + +0.6 601,222 + -1.2 601,222 + +0.0 601,222 + -0.3 601,222 + +0.3 601,222 + +0.5 601,222 + +0.6 601,223 - -1.6 601,223 - +0.1 601,223 - -0.2 601,251 - -0.2 601,264 + Xcc-8004.658.1 0.10 -0.4 601,264 + Xcc-8004.658.1 0.10 -2.3 601,265 - Xcc-8004.658.1 0.10 -0.6 601,345 - Xcc-8004.658.1 0.22 +0.3 601,358 - Xcc-8004.658.1 0.24 -0.6 601,370 + Xcc-8004.658.1 0.25 +0.3 601,371 - Xcc-8004.658.1 0.25 -1.9 601,371 - Xcc-8004.658.1 0.25 +0.4 601,396 - Xcc-8004.658.1 0.29 +0.7 601,396 - Xcc-8004.658.1 0.29 +0.2 601,396 - Xcc-8004.658.1 0.29 +0.7 601,405 + Xcc-8004.658.1 0.30 -0.8 601,405 + Xcc-8004.658.1 0.30 -0.5 601,474 + Xcc-8004.658.1 0.40 -1.2 601,500 - Xcc-8004.658.1 0.44 -0.2 601,500 - Xcc-8004.658.1 0.44 +0.7 601,500 - Xcc-8004.658.1 0.44 +1.2 601,553 + Xcc-8004.658.1 0.52 -0.6 601,553 + Xcc-8004.658.1 0.52 +1.2 601,553 + Xcc-8004.658.1 0.52 -0.8 601,554 - Xcc-8004.658.1 0.52 -0.2 601,554 - Xcc-8004.658.1 0.52 -0.3 601,584 + Xcc-8004.658.1 0.56 -0.7 601,584 + Xcc-8004.658.1 0.56 +1.7 601,584 + Xcc-8004.658.1 0.56 +0.1 601,584 + Xcc-8004.658.1 0.56 -1.5 601,584 + Xcc-8004.658.1 0.56 -1.6 601,584 + Xcc-8004.658.1 0.56 -1.9 601,630 + Xcc-8004.658.1 0.63 -0.4 601,631 - Xcc-8004.658.1 0.63 -0.1 601,631 - Xcc-8004.658.1 0.63 +0.0 601,658 - Xcc-8004.658.1 0.67 +0.7 601,659 + Xcc-8004.658.1 0.67 +0.9 601,660 - Xcc-8004.658.1 0.67 -0.6 601,829 + -0.1 601,830 - +0.8 601,863 - -0.9 601,865 + -0.2 601,865 + +0.3 601,865 + +0.7 601,866 - +0.6 601,866 - +0.1 601,885 + -0.3 601,886 - +0.5 601,886 - +0.9 602,092 - Xcc-8004.659.1 0.12 -1.3 602,189 + Xcc-8004.659.1 0.18 -1.6 602,190 - Xcc-8004.659.1 0.18 -0.1 602,444 + Xcc-8004.659.1 0.34 -0.3 602,576 + Xcc-8004.659.1 0.43 -0.3 602,576 + Xcc-8004.659.1 0.43 +0.1 602,576 + Xcc-8004.659.1 0.43 -1.1 602,859 + Xcc-8004.659.1 0.61 -0.3 602,903 + Xcc-8004.659.1 0.63 -1.5 602,904 - Xcc-8004.659.1 0.63 -1.5 603,024 - Xcc-8004.659.1 0.71 +0.1 603,024 - Xcc-8004.659.1 0.71 +1.7 603,521 + -0.7 603,521 + -1.1 603,521 + +0.1 603,521 + -0.8 603,522 - +2.0 603,571 + -0.4 603,571 + -0.9 603,571 + -1.1 603,571 + +1.2 603,571 + +1.3 603,571 + +0.7 603,571 + -0.3 603,571 + -0.0 603,571 + -0.9 603,571 + -2.1 603,571 + +0.0 603,572 - -0.4 603,572 - -0.3 603,572 - +0.4 603,572 - +0.2 603,700 + Xcc-8004.661.1 0.25 +0.5 603,730 + Xcc-8004.661.1 0.30 +1.0 603,730 + Xcc-8004.661.1 0.30 +1.0 603,730 + Xcc-8004.661.1 0.30 +0.4 603,730 + Xcc-8004.661.1 0.30 +0.6 603,730 + Xcc-8004.661.1 0.30 -0.8 603,730 + Xcc-8004.661.1 0.30 -1.0 603,731 - Xcc-8004.661.1 0.30 -0.2 603,731 - Xcc-8004.661.1 0.30 +0.2 603,731 - Xcc-8004.661.1 0.30 -0.2 603,731 - Xcc-8004.661.1 0.30 +0.5 603,731 - Xcc-8004.661.1 0.30 +0.2 603,829 + Xcc-8004.661.1 0.45 +0.8 603,872 - Xcc-8004.661.1 0.52 +1.1 603,992 - Xcc-8004.661.1 0.71 +0.3 604,241 + +0.0 604,241 + +0.7 604,241 + +1.5 604,242 - +0.7 604,242 - +0.2
Or see this region's nucleotide sequence