Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.657.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.656.1 and Xcc-8004.657.1 are separated by 87 nucleotidesXcc-8004.657.1 and Xcc-8004.658.1 are separated by 4 nucleotidesXcc-8004.658.1 and Xcc-8004.659.1 are separated by 8 nucleotides Xcc-8004.656.1: Xcc-8004.656.1 - FIG01209718: hypothetical protein, at 597,562 to 599,805 Xcc-8004.656.1 Xcc-8004.657.1: Xcc-8004.657.1 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 599,893 to 601,188 Xcc-8004.657.1 Xcc-8004.658.1: Xcc-8004.658.1 - FIG01211216: hypothetical protein, at 601,193 to 601,891 Xcc-8004.658.1 Xcc-8004.659.1: Xcc-8004.659.1 - IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 601,900 to 603,483 Xcc-8004.659.1 Position (kb) 599 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1at 598.906 kb on + strand, within Xcc-8004.656.1at 598.932 kb on - strand, within Xcc-8004.656.1at 598.974 kb on - strand, within Xcc-8004.656.1at 599.021 kb on + strand, within Xcc-8004.656.1at 599.021 kb on + strand, within Xcc-8004.656.1at 599.021 kb on + strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.024 kb on + strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.210 kb on + strand, within Xcc-8004.656.1at 599.211 kb on - strand, within Xcc-8004.656.1at 599.390 kb on + strand, within Xcc-8004.656.1at 599.391 kb on - strand, within Xcc-8004.656.1at 599.429 kb on + strand, within Xcc-8004.656.1at 599.430 kb on - strand, within Xcc-8004.656.1at 599.715 kb on - strandat 599.715 kb on - strandat 599.844 kb on + strandat 599.859 kb on - strandat 599.988 kb on - strandat 600.377 kb on + strand, within Xcc-8004.657.1at 600.788 kb on + strand, within Xcc-8004.657.1at 600.788 kb on + strand, within Xcc-8004.657.1at 600.788 kb on + strand, within Xcc-8004.657.1at 600.789 kb on - strand, within Xcc-8004.657.1at 600.789 kb on - strand, within Xcc-8004.657.1at 600.824 kb on + strand, within Xcc-8004.657.1at 600.824 kb on + strand, within Xcc-8004.657.1at 600.825 kb on - strand, within Xcc-8004.657.1at 600.827 kb on + strand, within Xcc-8004.657.1at 600.827 kb on + strand, within Xcc-8004.657.1at 600.879 kb on + strand, within Xcc-8004.657.1at 600.879 kb on + strand, within Xcc-8004.657.1at 600.879 kb on + strand, within Xcc-8004.657.1at 600.879 kb on + strand, within Xcc-8004.657.1at 600.879 kb on + strand, within Xcc-8004.657.1at 600.880 kb on - strand, within Xcc-8004.657.1at 600.880 kb on - strand, within Xcc-8004.657.1at 600.880 kb on - strand, within Xcc-8004.657.1at 600.880 kb on - strand, within Xcc-8004.657.1at 600.880 kb on - strand, within Xcc-8004.657.1at 600.880 kb on - strand, within Xcc-8004.657.1at 600.880 kb on - strand, within Xcc-8004.657.1at 601.195 kb on - strandat 601.217 kb on + strandat 601.217 kb on + strandat 601.218 kb on - strandat 601.218 kb on - strandat 601.222 kb on + strandat 601.222 kb on + strandat 601.222 kb on + strandat 601.222 kb on + strandat 601.222 kb on + strandat 601.222 kb on + strandat 601.222 kb on + strandat 601.223 kb on - strandat 601.223 kb on - strandat 601.223 kb on - strandat 601.251 kb on - strandat 601.264 kb on + strand, within Xcc-8004.658.1at 601.264 kb on + strand, within Xcc-8004.658.1at 601.265 kb on - strand, within Xcc-8004.658.1at 601.345 kb on - strand, within Xcc-8004.658.1at 601.358 kb on - strand, within Xcc-8004.658.1at 601.370 kb on + strand, within Xcc-8004.658.1at 601.371 kb on - strand, within Xcc-8004.658.1at 601.371 kb on - strand, within Xcc-8004.658.1at 601.396 kb on - strand, within Xcc-8004.658.1at 601.396 kb on - strand, within Xcc-8004.658.1at 601.396 kb on - strand, within Xcc-8004.658.1at 601.405 kb on + strand, within Xcc-8004.658.1at 601.405 kb on + strand, within Xcc-8004.658.1at 601.474 kb on + strand, within Xcc-8004.658.1at 601.500 kb on - strand, within Xcc-8004.658.1at 601.500 kb on - strand, within Xcc-8004.658.1at 601.500 kb on - strand, within Xcc-8004.658.1at 601.553 kb on + strand, within Xcc-8004.658.1at 601.553 kb on + strand, within Xcc-8004.658.1at 601.553 kb on + strand, within Xcc-8004.658.1at 601.554 kb on - strand, within Xcc-8004.658.1at 601.554 kb on - strand, within Xcc-8004.658.1at 601.584 kb on + strand, within Xcc-8004.658.1at 601.584 kb on + strand, within Xcc-8004.658.1at 601.584 kb on + strand, within Xcc-8004.658.1at 601.584 kb on + strand, within Xcc-8004.658.1at 601.584 kb on + strand, within Xcc-8004.658.1at 601.584 kb on + strand, within Xcc-8004.658.1at 601.630 kb on + strand, within Xcc-8004.658.1at 601.631 kb on - strand, within Xcc-8004.658.1at 601.631 kb on - strand, within Xcc-8004.658.1at 601.658 kb on - strand, within Xcc-8004.658.1at 601.659 kb on + strand, within Xcc-8004.658.1at 601.660 kb on - strand, within Xcc-8004.658.1at 601.829 kb on + strandat 601.830 kb on - strandat 601.863 kb on - strandat 601.865 kb on + strandat 601.865 kb on + strandat 601.865 kb on + strandat 601.866 kb on - strandat 601.866 kb on - strandat 601.885 kb on + strandat 601.886 kb on - strandat 601.886 kb on - strandat 602.092 kb on - strand, within Xcc-8004.659.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
598,906 + Xcc-8004.656.1 0.60 +0.4
598,932 - Xcc-8004.656.1 0.61 -1.2
598,974 - Xcc-8004.656.1 0.63 +0.1
599,021 + Xcc-8004.656.1 0.65 +0.1
599,021 + Xcc-8004.656.1 0.65 +1.7
599,021 + Xcc-8004.656.1 0.65 +0.6
599,022 - Xcc-8004.656.1 0.65 -0.1
599,022 - Xcc-8004.656.1 0.65 +1.5
599,022 - Xcc-8004.656.1 0.65 -0.4
599,022 - Xcc-8004.656.1 0.65 -0.5
599,022 - Xcc-8004.656.1 0.65 +0.8
599,022 - Xcc-8004.656.1 0.65 +0.1
599,022 - Xcc-8004.656.1 0.65 +0.6
599,022 - Xcc-8004.656.1 0.65 +0.1
599,024 + Xcc-8004.656.1 0.65 +1.3
599,025 - Xcc-8004.656.1 0.65 +0.4
599,025 - Xcc-8004.656.1 0.65 +0.5
599,025 - Xcc-8004.656.1 0.65 +1.0
599,025 - Xcc-8004.656.1 0.65 +0.3
599,210 + Xcc-8004.656.1 0.73 -1.2
599,211 - Xcc-8004.656.1 0.73 +0.2
599,390 + Xcc-8004.656.1 0.81 -0.3
599,391 - Xcc-8004.656.1 0.82 -0.0
599,429 + Xcc-8004.656.1 0.83 +0.1
599,430 - Xcc-8004.656.1 0.83 -1.0
599,715 - +0.4
599,715 - +0.1
599,844 + +0.3
599,859 - +0.4
599,988 - -3.7
600,377 + Xcc-8004.657.1 0.37 -1.1
600,788 + Xcc-8004.657.1 0.69 -1.3
600,788 + Xcc-8004.657.1 0.69 -2.5
600,788 + Xcc-8004.657.1 0.69 -3.1
600,789 - Xcc-8004.657.1 0.69 -1.5
600,789 - Xcc-8004.657.1 0.69 -2.4
600,824 + Xcc-8004.657.1 0.72 -1.6
600,824 + Xcc-8004.657.1 0.72 -2.8
600,825 - Xcc-8004.657.1 0.72 -1.8
600,827 + Xcc-8004.657.1 0.72 -2.4
600,827 + Xcc-8004.657.1 0.72 +0.5
600,879 + Xcc-8004.657.1 0.76 -0.7
600,879 + Xcc-8004.657.1 0.76 -1.3
600,879 + Xcc-8004.657.1 0.76 -1.8
600,879 + Xcc-8004.657.1 0.76 -1.1
600,879 + Xcc-8004.657.1 0.76 -1.5
600,880 - Xcc-8004.657.1 0.76 -3.4
600,880 - Xcc-8004.657.1 0.76 -1.9
600,880 - Xcc-8004.657.1 0.76 -1.8
600,880 - Xcc-8004.657.1 0.76 -0.6
600,880 - Xcc-8004.657.1 0.76 -1.9
600,880 - Xcc-8004.657.1 0.76 -0.6
600,880 - Xcc-8004.657.1 0.76 -2.8
601,195 - -0.9
601,217 + +0.6
601,217 + -1.3
601,218 - +0.1
601,218 - -0.7
601,222 + +0.6
601,222 + -1.2
601,222 + +0.0
601,222 + -0.3
601,222 + +0.3
601,222 + +0.5
601,222 + +0.6
601,223 - -1.6
601,223 - +0.1
601,223 - -0.2
601,251 - -0.2
601,264 + Xcc-8004.658.1 0.10 -0.4
601,264 + Xcc-8004.658.1 0.10 -2.3
601,265 - Xcc-8004.658.1 0.10 -0.6
601,345 - Xcc-8004.658.1 0.22 +0.3
601,358 - Xcc-8004.658.1 0.24 -0.6
601,370 + Xcc-8004.658.1 0.25 +0.3
601,371 - Xcc-8004.658.1 0.25 -1.9
601,371 - Xcc-8004.658.1 0.25 +0.4
601,396 - Xcc-8004.658.1 0.29 +0.7
601,396 - Xcc-8004.658.1 0.29 +0.2
601,396 - Xcc-8004.658.1 0.29 +0.7
601,405 + Xcc-8004.658.1 0.30 -0.8
601,405 + Xcc-8004.658.1 0.30 -0.5
601,474 + Xcc-8004.658.1 0.40 -1.2
601,500 - Xcc-8004.658.1 0.44 -0.2
601,500 - Xcc-8004.658.1 0.44 +0.7
601,500 - Xcc-8004.658.1 0.44 +1.2
601,553 + Xcc-8004.658.1 0.52 -0.6
601,553 + Xcc-8004.658.1 0.52 +1.2
601,553 + Xcc-8004.658.1 0.52 -0.8
601,554 - Xcc-8004.658.1 0.52 -0.2
601,554 - Xcc-8004.658.1 0.52 -0.3
601,584 + Xcc-8004.658.1 0.56 -0.7
601,584 + Xcc-8004.658.1 0.56 +1.7
601,584 + Xcc-8004.658.1 0.56 +0.1
601,584 + Xcc-8004.658.1 0.56 -1.5
601,584 + Xcc-8004.658.1 0.56 -1.6
601,584 + Xcc-8004.658.1 0.56 -1.9
601,630 + Xcc-8004.658.1 0.63 -0.4
601,631 - Xcc-8004.658.1 0.63 -0.1
601,631 - Xcc-8004.658.1 0.63 +0.0
601,658 - Xcc-8004.658.1 0.67 +0.7
601,659 + Xcc-8004.658.1 0.67 +0.9
601,660 - Xcc-8004.658.1 0.67 -0.6
601,829 + -0.1
601,830 - +0.8
601,863 - -0.9
601,865 + -0.2
601,865 + +0.3
601,865 + +0.7
601,866 - +0.6
601,866 - +0.1
601,885 + -0.3
601,886 - +0.5
601,886 - +0.9
602,092 - Xcc-8004.659.1 0.12 -1.3

Or see this region's nucleotide sequence