Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.621.1 and Xcc-8004.622.1 are separated by 123 nucleotides Xcc-8004.622.1 and Xcc-8004.623.1 overlap by 8 nucleotides Xcc-8004.623.1 and Xcc-8004.624.1 are separated by 336 nucleotides
Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746
Xcc-8004.621.1
Xcc-8004.622.1: Xcc-8004.622.1 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 573,870 to 574,667
Xcc-8004.622.1
Xcc-8004.623.1: Xcc-8004.623.1 - Phosphoserine phosphatase, at 574,660 to 575,376
Xcc-8004.623.1
Xcc-8004.624.1: Xcc-8004.624.1 - Cyclic AMP receptor protein, at 575,713 to 576,405
Xcc-8004.624.1
Position (kb) 574
575
576 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 573.708 kb on + strand at 573.709 kb on - strand at 573.709 kb on - strand at 573.878 kb on + strand at 573.963 kb on - strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.049 kb on - strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.186 kb on - strand, within Xcc-8004.622.1 at 574.260 kb on + strand, within Xcc-8004.622.1 at 574.261 kb on - strand, within Xcc-8004.622.1 at 574.649 kb on - strand at 574.649 kb on - strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.730 kb on - strand at 574.871 kb on - strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.934 kb on - strand, within Xcc-8004.623.1 at 575.208 kb on + strand, within Xcc-8004.623.1 at 575.216 kb on - strand, within Xcc-8004.623.1 at 575.312 kb on + strand at 575.312 kb on + strand at 575.375 kb on - strand at 575.401 kb on - strand at 575.418 kb on + strand at 575.419 kb on - strand at 575.419 kb on - strand at 575.528 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.615 kb on + strand at 575.616 kb on - strand at 575.616 kb on - strand at 575.714 kb on + strand at 575.715 kb on - strand at 575.715 kb on - strand at 575.715 kb on - strand at 575.726 kb on + strand at 575.726 kb on + strand at 575.727 kb on - strand at 575.727 kb on - strand at 575.965 kb on - strand, within Xcc-8004.624.1 at 576.002 kb on + strand, within Xcc-8004.624.1 at 576.003 kb on - strand, within Xcc-8004.624.1 at 576.062 kb on + strand, within Xcc-8004.624.1 at 576.063 kb on - strand, within Xcc-8004.624.1 at 576.063 kb on - strand, within Xcc-8004.624.1 at 576.170 kb on + strand, within Xcc-8004.624.1 at 576.171 kb on - strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.236 kb on + strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.237 kb on - strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.239 kb on + strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.240 kb on - strand, within Xcc-8004.624.1 at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.363 kb on + strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.364 kb on - strand at 576.367 kb on + strand at 576.368 kb on - strand at 576.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 573,708 + -3.3 573,709 - -3.3 573,709 - -2.0 573,878 + -3.9 573,963 - Xcc-8004.622.1 0.12 -2.2 574,048 + Xcc-8004.622.1 0.22 -3.3 574,048 + Xcc-8004.622.1 0.22 -1.9 574,049 - Xcc-8004.622.1 0.22 -2.8 574,161 + Xcc-8004.622.1 0.36 -1.2 574,161 + Xcc-8004.622.1 0.36 -1.9 574,161 + Xcc-8004.622.1 0.36 -1.9 574,162 - Xcc-8004.622.1 0.37 -2.5 574,162 - Xcc-8004.622.1 0.37 -0.5 574,162 - Xcc-8004.622.1 0.37 -2.5 574,186 - Xcc-8004.622.1 0.40 -3.4 574,260 + Xcc-8004.622.1 0.49 -4.0 574,261 - Xcc-8004.622.1 0.49 -0.9 574,649 - -2.4 574,649 - -2.4 574,672 + -0.5 574,672 + +1.7 574,672 + -0.1 574,730 - -0.9 574,871 - Xcc-8004.623.1 0.29 -0.5 574,933 + Xcc-8004.623.1 0.38 -1.4 574,933 + Xcc-8004.623.1 0.38 -1.6 574,934 - Xcc-8004.623.1 0.38 +1.7 575,208 + Xcc-8004.623.1 0.76 +0.4 575,216 - Xcc-8004.623.1 0.78 +0.1 575,312 + +0.4 575,312 + -0.8 575,375 - -0.8 575,401 - +0.6 575,418 + -0.5 575,419 - -0.5 575,419 - -0.1 575,528 + +0.0 575,537 + +0.8 575,537 + -1.8 575,537 + -0.7 575,537 + -0.2 575,537 + +0.1 575,538 - +1.3 575,538 - -0.9 575,538 - -1.8 575,538 - +1.7 575,538 - +0.5 575,538 - -0.3 575,538 - +0.5 575,538 - +0.4 575,538 - +0.2 575,615 + +0.1 575,616 - +0.4 575,616 - -0.9 575,714 + -0.8 575,715 - +0.7 575,715 - -0.3 575,715 - +1.7 575,726 + +0.1 575,726 + +2.5 575,727 - +0.2 575,727 - +0.9 575,965 - Xcc-8004.624.1 0.36 -0.3 576,002 + Xcc-8004.624.1 0.42 -0.6 576,003 - Xcc-8004.624.1 0.42 -1.3 576,062 + Xcc-8004.624.1 0.50 +1.8 576,063 - Xcc-8004.624.1 0.51 -0.9 576,063 - Xcc-8004.624.1 0.51 -0.1 576,170 + Xcc-8004.624.1 0.66 +1.0 576,171 - Xcc-8004.624.1 0.66 +0.9 576,236 + Xcc-8004.624.1 0.75 -0.9 576,236 + Xcc-8004.624.1 0.75 -0.1 576,236 + Xcc-8004.624.1 0.75 +3.1 576,236 + Xcc-8004.624.1 0.75 -0.6 576,236 + Xcc-8004.624.1 0.75 +1.1 576,236 + Xcc-8004.624.1 0.75 +1.5 576,236 + Xcc-8004.624.1 0.75 -0.2 576,236 + Xcc-8004.624.1 0.75 +1.6 576,236 + Xcc-8004.624.1 0.75 +0.4 576,236 + Xcc-8004.624.1 0.75 -0.1 576,237 - Xcc-8004.624.1 0.76 +1.5 576,237 - Xcc-8004.624.1 0.76 +1.7 576,237 - Xcc-8004.624.1 0.76 -0.9 576,237 - Xcc-8004.624.1 0.76 +0.8 576,237 - Xcc-8004.624.1 0.76 -0.1 576,239 + Xcc-8004.624.1 0.76 +0.7 576,239 + Xcc-8004.624.1 0.76 -0.9 576,239 + Xcc-8004.624.1 0.76 +0.8 576,240 - Xcc-8004.624.1 0.76 +0.2 576,240 - Xcc-8004.624.1 0.76 -0.2 576,240 - Xcc-8004.624.1 0.76 +0.8 576,240 - Xcc-8004.624.1 0.76 +0.2 576,363 + -1.1 576,363 + +1.7 576,363 + +1.7 576,363 + +0.0 576,363 + +0.9 576,363 + +0.6 576,363 + -0.7 576,364 - -0.8 576,364 - +1.5 576,364 - +0.7 576,364 - -0.7 576,364 - -0.6 576,364 - -0.4 576,367 + +0.1 576,368 - -1.0 576,368 - +1.4
Or see this region's nucleotide sequence