Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.618.1 and Xcc-8004.619.1 are separated by 123 nucleotides Xcc-8004.619.1 and Xcc-8004.621.1 are separated by 124 nucleotides Xcc-8004.621.1 and Xcc-8004.622.1 are separated by 123 nucleotides Xcc-8004.622.1 and Xcc-8004.623.1 overlap by 8 nucleotides
Xcc-8004.618.1: Xcc-8004.618.1 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 571,250 to 571,828
Xcc-8004.618.1
Xcc-8004.619.1: Xcc-8004.619.1 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 571,952 to 572,584
Xcc-8004.619.1
Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746
Xcc-8004.621.1
Xcc-8004.622.1: Xcc-8004.622.1 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 573,870 to 574,667
Xcc-8004.622.1
Xcc-8004.623.1: Xcc-8004.623.1 - Phosphoserine phosphatase, at 574,660 to 575,376
Xcc-8004.623.1
Position (kb) 572
573
574 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 571.928 kb on + strand at 571.928 kb on + strand at 571.929 kb on - strand at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.480 kb on + strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.531 kb on + strand at 572.624 kb on + strand at 572.625 kb on - strand at 572.692 kb on - strand at 572.692 kb on - strand at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.448 kb on + strand, within Xcc-8004.621.1 at 573.457 kb on - strand, within Xcc-8004.621.1 at 573.615 kb on + strand, within Xcc-8004.621.1 at 573.615 kb on + strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.708 kb on + strand at 573.709 kb on - strand at 573.709 kb on - strand at 573.878 kb on + strand at 573.963 kb on - strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.049 kb on - strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.186 kb on - strand, within Xcc-8004.622.1 at 574.260 kb on + strand, within Xcc-8004.622.1 at 574.261 kb on - strand, within Xcc-8004.622.1 at 574.649 kb on - strand at 574.649 kb on - strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 571,928 + -0.3 571,928 + +1.9 571,929 - -0.3 572,124 - Xcc-8004.619.1 0.27 +0.8 572,124 - Xcc-8004.619.1 0.27 -0.5 572,124 - Xcc-8004.619.1 0.27 -0.5 572,480 + Xcc-8004.619.1 0.83 +1.5 572,481 - Xcc-8004.619.1 0.84 -0.0 572,481 - Xcc-8004.619.1 0.84 +1.5 572,531 + -0.7 572,624 + +1.0 572,625 - +0.3 572,692 - -1.8 572,692 - -0.9 573,171 + Xcc-8004.621.1 0.45 -2.2 573,171 + Xcc-8004.621.1 0.45 -1.6 573,171 + Xcc-8004.621.1 0.45 -1.5 573,172 - Xcc-8004.621.1 0.45 -1.1 573,172 - Xcc-8004.621.1 0.45 -3.4 573,448 + Xcc-8004.621.1 0.71 -2.0 573,457 - Xcc-8004.621.1 0.72 -2.6 573,615 + Xcc-8004.621.1 0.87 -2.4 573,615 + Xcc-8004.621.1 0.87 -2.5 573,616 - Xcc-8004.621.1 0.87 -2.6 573,616 - Xcc-8004.621.1 0.87 -1.6 573,616 - Xcc-8004.621.1 0.87 -2.7 573,616 - Xcc-8004.621.1 0.87 -2.0 573,708 + -3.3 573,709 - -3.3 573,709 - -2.0 573,878 + -3.9 573,963 - Xcc-8004.622.1 0.12 -2.2 574,048 + Xcc-8004.622.1 0.22 -3.3 574,048 + Xcc-8004.622.1 0.22 -1.9 574,049 - Xcc-8004.622.1 0.22 -2.8 574,161 + Xcc-8004.622.1 0.36 -1.2 574,161 + Xcc-8004.622.1 0.36 -1.9 574,161 + Xcc-8004.622.1 0.36 -1.9 574,162 - Xcc-8004.622.1 0.37 -2.5 574,162 - Xcc-8004.622.1 0.37 -0.5 574,162 - Xcc-8004.622.1 0.37 -2.5 574,186 - Xcc-8004.622.1 0.40 -3.4 574,260 + Xcc-8004.622.1 0.49 -4.0 574,261 - Xcc-8004.622.1 0.49 -0.9 574,649 - -2.4 574,649 - -2.4 574,672 + -0.5 574,672 + +1.7 574,672 + -0.1 574,730 - -0.9
Or see this region's nucleotide sequence