Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.616.1 and Xcc-8004.618.1 are separated by 145 nucleotides Xcc-8004.618.1 and Xcc-8004.619.1 are separated by 123 nucleotides Xcc-8004.619.1 and Xcc-8004.621.1 are separated by 124 nucleotides
Xcc-8004.616.1: Xcc-8004.616.1 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 569,488 to 571,104
Xcc-8004.616.1
Xcc-8004.618.1: Xcc-8004.618.1 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 571,250 to 571,828
Xcc-8004.618.1
Xcc-8004.619.1: Xcc-8004.619.1 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 571,952 to 572,584
Xcc-8004.619.1
Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746
Xcc-8004.621.1
Position (kb) 571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.283 kb on + strand, within Xcc-8004.616.1 at 570.284 kb on - strand, within Xcc-8004.616.1 at 570.284 kb on - strand, within Xcc-8004.616.1 at 570.371 kb on - strand, within Xcc-8004.616.1 at 570.580 kb on + strand, within Xcc-8004.616.1 at 570.669 kb on - strand, within Xcc-8004.616.1 at 570.685 kb on - strand, within Xcc-8004.616.1 at 570.740 kb on + strand, within Xcc-8004.616.1 at 570.814 kb on - strand, within Xcc-8004.616.1 at 570.899 kb on - strand, within Xcc-8004.616.1 at 570.940 kb on + strand, within Xcc-8004.616.1 at 570.940 kb on + strand, within Xcc-8004.616.1 at 570.940 kb on + strand, within Xcc-8004.616.1 at 570.951 kb on + strand at 570.951 kb on + strand at 570.961 kb on + strand at 570.962 kb on - strand at 571.156 kb on - strand at 571.263 kb on + strand at 571.267 kb on + strand at 571.268 kb on - strand at 571.268 kb on - strand at 571.271 kb on + strand at 571.272 kb on - strand at 571.272 kb on - strand at 571.286 kb on + strand at 571.286 kb on + strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.302 kb on - strand at 571.514 kb on + strand, within Xcc-8004.618.1 at 571.613 kb on + strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.628 kb on + strand, within Xcc-8004.618.1 at 571.928 kb on + strand at 571.928 kb on + strand at 571.929 kb on - strand at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.480 kb on + strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.531 kb on + strand at 572.624 kb on + strand at 572.625 kb on - strand at 572.692 kb on - strand at 572.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 570,283 + Xcc-8004.616.1 0.49 +0.2 570,284 - Xcc-8004.616.1 0.49 +0.3 570,284 - Xcc-8004.616.1 0.49 -0.9 570,371 - Xcc-8004.616.1 0.55 -0.3 570,580 + Xcc-8004.616.1 0.68 +0.0 570,669 - Xcc-8004.616.1 0.73 +0.0 570,685 - Xcc-8004.616.1 0.74 -0.2 570,740 + Xcc-8004.616.1 0.77 -0.3 570,814 - Xcc-8004.616.1 0.82 -0.2 570,899 - Xcc-8004.616.1 0.87 -1.0 570,940 + Xcc-8004.616.1 0.90 -0.4 570,940 + Xcc-8004.616.1 0.90 +0.7 570,940 + Xcc-8004.616.1 0.90 +1.0 570,951 + -1.1 570,951 + -0.4 570,961 + +1.7 570,962 - +0.1 571,156 - -0.9 571,263 + -0.5 571,267 + -3.4 571,268 - -3.2 571,268 - -3.2 571,271 + -0.9 571,272 - -2.7 571,272 - -3.6 571,286 + -3.6 571,286 + -0.6 571,287 - -1.1 571,287 - -2.5 571,287 - -0.9 571,302 - -2.1 571,514 + Xcc-8004.618.1 0.46 -3.3 571,613 + Xcc-8004.618.1 0.63 -2.1 571,614 - Xcc-8004.618.1 0.63 -0.8 571,614 - Xcc-8004.618.1 0.63 +1.7 571,614 - Xcc-8004.618.1 0.63 +0.7 571,628 + Xcc-8004.618.1 0.65 -0.9 571,928 + -0.3 571,928 + +1.9 571,929 - -0.3 572,124 - Xcc-8004.619.1 0.27 +0.8 572,124 - Xcc-8004.619.1 0.27 -0.5 572,124 - Xcc-8004.619.1 0.27 -0.5 572,480 + Xcc-8004.619.1 0.83 +1.5 572,481 - Xcc-8004.619.1 0.84 -0.0 572,481 - Xcc-8004.619.1 0.84 +1.5 572,531 + -0.7 572,624 + +1.0 572,625 - +0.3 572,692 - -1.8 572,692 - -0.9
Or see this region's nucleotide sequence