Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.609.1 and Xcc-8004.610.1 are separated by 13 nucleotides Xcc-8004.610.1 and Xcc-8004.611.1 are separated by 124 nucleotides
Xcc-8004.609.1: Xcc-8004.609.1 - hypothetical protein, at 561,540 to 562,610
Xcc-8004.609.1
Xcc-8004.610.1: Xcc-8004.610.1 - putative; ORF located using Glimmer/Genemark, at 562,624 to 562,989
Xcc-8004.610.1
Xcc-8004.611.1: Xcc-8004.611.1 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 563,114 to 566,098
Xcc-8004.611.1
Position (kb) 562
563 Strain fitness (log2 ratio) -1
0
1
2 at 562.003 kb on - strand, within Xcc-8004.609.1 at 562.062 kb on + strand, within Xcc-8004.609.1 at 562.063 kb on - strand, within Xcc-8004.609.1 at 562.153 kb on - strand, within Xcc-8004.609.1 at 562.569 kb on + strand at 562.569 kb on + strand at 562.569 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.616 kb on + strand at 562.616 kb on + strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.636 kb on - strand at 562.705 kb on - strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.873 kb on - strand, within Xcc-8004.610.1 at 562.898 kb on - strand, within Xcc-8004.610.1 at 562.994 kb on + strand at 563.113 kb on + strand at 563.114 kb on - strand at 563.175 kb on - strand at 563.310 kb on + strand at 563.310 kb on + strand at 563.351 kb on - strand at 563.446 kb on + strand, within Xcc-8004.611.1 at 563.468 kb on + strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.526 kb on + strand, within Xcc-8004.611.1 at 563.527 kb on - strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.567 kb on + strand, within Xcc-8004.611.1 at 563.568 kb on - strand, within Xcc-8004.611.1 at 563.718 kb on - strand, within Xcc-8004.611.1 at 563.724 kb on - strand, within Xcc-8004.611.1 at 563.740 kb on + strand, within Xcc-8004.611.1 at 563.806 kb on - strand, within Xcc-8004.611.1 at 563.864 kb on + strand, within Xcc-8004.611.1 at 563.924 kb on + strand, within Xcc-8004.611.1 at 563.924 kb on + strand, within Xcc-8004.611.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 562,003 - Xcc-8004.609.1 0.43 +2.3 562,062 + Xcc-8004.609.1 0.49 -1.6 562,063 - Xcc-8004.609.1 0.49 +0.0 562,153 - Xcc-8004.609.1 0.57 -0.2 562,569 + -0.1 562,569 + +0.4 562,569 + -0.2 562,612 + -0.6 562,612 + -0.1 562,612 + -0.3 562,612 + -0.4 562,616 + -0.8 562,616 + -1.6 562,617 - +0.7 562,617 - -0.3 562,617 - +0.4 562,617 - +0.5 562,636 - +0.6 562,705 - Xcc-8004.610.1 0.22 -0.4 562,872 + Xcc-8004.610.1 0.68 -0.6 562,872 + Xcc-8004.610.1 0.68 -1.0 562,873 - Xcc-8004.610.1 0.68 -0.5 562,898 - Xcc-8004.610.1 0.75 +0.3 562,994 + -1.0 563,113 + +0.6 563,114 - +0.2 563,175 - +1.5 563,310 + -0.6 563,310 + +0.2 563,351 - +0.1 563,446 + Xcc-8004.611.1 0.11 +2.7 563,468 + Xcc-8004.611.1 0.12 +0.4 563,469 - Xcc-8004.611.1 0.12 -1.4 563,469 - Xcc-8004.611.1 0.12 -0.3 563,526 + Xcc-8004.611.1 0.14 +2.1 563,527 - Xcc-8004.611.1 0.14 +0.8 563,530 + Xcc-8004.611.1 0.14 +0.5 563,530 + Xcc-8004.611.1 0.14 +0.4 563,530 + Xcc-8004.611.1 0.14 -0.9 563,530 + Xcc-8004.611.1 0.14 -0.9 563,531 - Xcc-8004.611.1 0.14 -0.4 563,531 - Xcc-8004.611.1 0.14 -0.5 563,567 + Xcc-8004.611.1 0.15 -0.9 563,568 - Xcc-8004.611.1 0.15 +0.5 563,718 - Xcc-8004.611.1 0.20 +0.7 563,724 - Xcc-8004.611.1 0.20 -0.4 563,740 + Xcc-8004.611.1 0.21 +0.4 563,806 - Xcc-8004.611.1 0.23 +0.9 563,864 + Xcc-8004.611.1 0.25 -0.2 563,924 + Xcc-8004.611.1 0.27 +0.5 563,924 + Xcc-8004.611.1 0.27 -0.8
Or see this region's nucleotide sequence