Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.609.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.608.1 and Xcc-8004.609.1 overlap by 1 nucleotidesXcc-8004.609.1 and Xcc-8004.610.1 are separated by 13 nucleotidesXcc-8004.610.1 and Xcc-8004.611.1 are separated by 124 nucleotides Xcc-8004.608.1: Xcc-8004.608.1 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 560,065 to 561,540 Xcc-8004.608.1 Xcc-8004.609.1: Xcc-8004.609.1 - hypothetical protein, at 561,540 to 562,610 Xcc-8004.609.1 Xcc-8004.610.1: Xcc-8004.610.1 - putative; ORF located using Glimmer/Genemark, at 562,624 to 562,989 Xcc-8004.610.1 Xcc-8004.611.1: Xcc-8004.611.1 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 563,114 to 566,098 Xcc-8004.611.1 Position (kb) 561 562 563Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.609 kb on - strand, within Xcc-8004.608.1at 560.609 kb on - strand, within Xcc-8004.608.1at 560.770 kb on + strand, within Xcc-8004.608.1at 560.770 kb on + strand, within Xcc-8004.608.1at 560.771 kb on - strand, within Xcc-8004.608.1at 560.771 kb on - strand, within Xcc-8004.608.1at 560.851 kb on + strand, within Xcc-8004.608.1at 560.851 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.885 kb on - strand, within Xcc-8004.608.1at 560.885 kb on - strand, within Xcc-8004.608.1at 560.891 kb on - strand, within Xcc-8004.608.1at 560.918 kb on + strand, within Xcc-8004.608.1at 560.918 kb on + strand, within Xcc-8004.608.1at 560.918 kb on + strand, within Xcc-8004.608.1at 561.165 kb on + strand, within Xcc-8004.608.1at 561.166 kb on - strand, within Xcc-8004.608.1at 561.331 kb on + strand, within Xcc-8004.608.1at 561.331 kb on + strand, within Xcc-8004.608.1at 561.332 kb on - strand, within Xcc-8004.608.1at 561.349 kb on + strand, within Xcc-8004.608.1at 561.349 kb on + strand, within Xcc-8004.608.1at 561.349 kb on + strand, within Xcc-8004.608.1at 561.350 kb on - strand, within Xcc-8004.608.1at 561.416 kb on - strandat 561.416 kb on - strandat 561.421 kb on + strandat 561.421 kb on + strandat 561.421 kb on + strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.448 kb on + strandat 561.448 kb on + strandat 561.448 kb on + strandat 561.449 kb on - strandat 561.586 kb on - strandat 562.003 kb on - strand, within Xcc-8004.609.1at 562.062 kb on + strand, within Xcc-8004.609.1at 562.063 kb on - strand, within Xcc-8004.609.1at 562.153 kb on - strand, within Xcc-8004.609.1at 562.569 kb on + strandat 562.569 kb on + strandat 562.569 kb on + strandat 562.612 kb on + strandat 562.612 kb on + strandat 562.612 kb on + strandat 562.612 kb on + strandat 562.616 kb on + strandat 562.616 kb on + strandat 562.617 kb on - strandat 562.617 kb on - strandat 562.617 kb on - strandat 562.617 kb on - strandat 562.636 kb on - strandat 562.705 kb on - strand, within Xcc-8004.610.1at 562.872 kb on + strand, within Xcc-8004.610.1at 562.872 kb on + strand, within Xcc-8004.610.1at 562.873 kb on - strand, within Xcc-8004.610.1at 562.898 kb on - strand, within Xcc-8004.610.1at 562.994 kb on + strandat 563.113 kb on + strandat 563.114 kb on - strandat 563.175 kb on - strandat 563.310 kb on + strandat 563.310 kb on + strandat 563.351 kb on - strandat 563.446 kb on + strand, within Xcc-8004.611.1at 563.468 kb on + strand, within Xcc-8004.611.1at 563.469 kb on - strand, within Xcc-8004.611.1at 563.469 kb on - strand, within Xcc-8004.611.1at 563.526 kb on + strand, within Xcc-8004.611.1at 563.527 kb on - strand, within Xcc-8004.611.1at 563.530 kb on + strand, within Xcc-8004.611.1at 563.530 kb on + strand, within Xcc-8004.611.1at 563.530 kb on + strand, within Xcc-8004.611.1at 563.530 kb on + strand, within Xcc-8004.611.1at 563.531 kb on - strand, within Xcc-8004.611.1at 563.531 kb on - strand, within Xcc-8004.611.1at 563.567 kb on + strand, within Xcc-8004.611.1at 563.568 kb on - strand, within Xcc-8004.611.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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560,608 + Xcc-8004.608.1 0.37 -1.3
560,608 + Xcc-8004.608.1 0.37 +0.5
560,608 + Xcc-8004.608.1 0.37 -2.2
560,608 + Xcc-8004.608.1 0.37 -2.2
560,608 + Xcc-8004.608.1 0.37 -3.3
560,609 - Xcc-8004.608.1 0.37 -1.1
560,609 - Xcc-8004.608.1 0.37 -2.8
560,770 + Xcc-8004.608.1 0.48 -1.1
560,770 + Xcc-8004.608.1 0.48 -3.0
560,771 - Xcc-8004.608.1 0.48 -2.5
560,771 - Xcc-8004.608.1 0.48 -3.9
560,851 + Xcc-8004.608.1 0.53 +0.3
560,851 + Xcc-8004.608.1 0.53 -1.6
560,884 + Xcc-8004.608.1 0.55 -3.8
560,884 + Xcc-8004.608.1 0.55 -2.3
560,884 + Xcc-8004.608.1 0.55 -0.9
560,884 + Xcc-8004.608.1 0.55 -2.8
560,884 + Xcc-8004.608.1 0.55 -1.4
560,885 - Xcc-8004.608.1 0.56 -3.5
560,885 - Xcc-8004.608.1 0.56 -3.4
560,891 - Xcc-8004.608.1 0.56 -2.8
560,918 + Xcc-8004.608.1 0.58 -1.1
560,918 + Xcc-8004.608.1 0.58 -1.7
560,918 + Xcc-8004.608.1 0.58 -3.5
561,165 + Xcc-8004.608.1 0.75 -2.0
561,166 - Xcc-8004.608.1 0.75 -2.8
561,331 + Xcc-8004.608.1 0.86 -2.2
561,331 + Xcc-8004.608.1 0.86 +0.7
561,332 - Xcc-8004.608.1 0.86 -1.9
561,349 + Xcc-8004.608.1 0.87 -1.6
561,349 + Xcc-8004.608.1 0.87 -2.8
561,349 + Xcc-8004.608.1 0.87 -1.8
561,350 - Xcc-8004.608.1 0.87 -0.1
561,416 - -0.6
561,416 - -1.0
561,421 + -3.0
561,421 + -1.3
561,421 + -2.2
561,422 - -0.8
561,422 - -3.1
561,422 - -1.1
561,422 - -0.9
561,422 - -3.0
561,422 - -2.4
561,448 + -1.1
561,448 + -2.9
561,448 + -3.0
561,449 - -2.4
561,586 - +0.4
562,003 - Xcc-8004.609.1 0.43 +2.3
562,062 + Xcc-8004.609.1 0.49 -1.6
562,063 - Xcc-8004.609.1 0.49 +0.0
562,153 - Xcc-8004.609.1 0.57 -0.2
562,569 + -0.1
562,569 + +0.4
562,569 + -0.2
562,612 + -0.6
562,612 + -0.1
562,612 + -0.3
562,612 + -0.4
562,616 + -0.8
562,616 + -1.6
562,617 - +0.7
562,617 - -0.3
562,617 - +0.4
562,617 - +0.5
562,636 - +0.6
562,705 - Xcc-8004.610.1 0.22 -0.4
562,872 + Xcc-8004.610.1 0.68 -0.6
562,872 + Xcc-8004.610.1 0.68 -1.0
562,873 - Xcc-8004.610.1 0.68 -0.5
562,898 - Xcc-8004.610.1 0.75 +0.3
562,994 + -1.0
563,113 + +0.6
563,114 - +0.2
563,175 - +1.5
563,310 + -0.6
563,310 + +0.2
563,351 - +0.1
563,446 + Xcc-8004.611.1 0.11 +2.7
563,468 + Xcc-8004.611.1 0.12 +0.4
563,469 - Xcc-8004.611.1 0.12 -1.4
563,469 - Xcc-8004.611.1 0.12 -0.3
563,526 + Xcc-8004.611.1 0.14 +2.1
563,527 - Xcc-8004.611.1 0.14 +0.8
563,530 + Xcc-8004.611.1 0.14 +0.5
563,530 + Xcc-8004.611.1 0.14 +0.4
563,530 + Xcc-8004.611.1 0.14 -0.9
563,530 + Xcc-8004.611.1 0.14 -0.9
563,531 - Xcc-8004.611.1 0.14 -0.4
563,531 - Xcc-8004.611.1 0.14 -0.5
563,567 + Xcc-8004.611.1 0.15 -0.9
563,568 - Xcc-8004.611.1 0.15 +0.5

Or see this region's nucleotide sequence