Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.608.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.607.1 and Xcc-8004.608.1 are separated by 482 nucleotidesXcc-8004.608.1 and Xcc-8004.609.1 overlap by 1 nucleotides Xcc-8004.607.1: Xcc-8004.607.1 - hypothetical protein, at 558,557 to 559,582 Xcc-8004.607.1 Xcc-8004.608.1: Xcc-8004.608.1 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 560,065 to 561,540 Xcc-8004.608.1 Xcc-8004.609.1: Xcc-8004.609.1 - hypothetical protein, at 561,540 to 562,610 Xcc-8004.609.1 Position (kb) 560 561 562Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.155 kb on - strand, within Xcc-8004.607.1at 559.155 kb on - strand, within Xcc-8004.607.1at 559.677 kb on + strandat 559.678 kb on - strandat 559.678 kb on - strandat 559.747 kb on + strandat 559.748 kb on - strandat 559.855 kb on - strandat 559.928 kb on - strandat 559.945 kb on - strandat 559.945 kb on - strandat 559.950 kb on - strandat 560.168 kb on - strandat 560.197 kb on + strandat 560.197 kb on + strandat 560.197 kb on + strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.240 kb on - strand, within Xcc-8004.608.1at 560.273 kb on - strand, within Xcc-8004.608.1at 560.273 kb on - strand, within Xcc-8004.608.1at 560.455 kb on + strand, within Xcc-8004.608.1at 560.455 kb on + strand, within Xcc-8004.608.1at 560.455 kb on + strand, within Xcc-8004.608.1at 560.456 kb on - strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.608 kb on + strand, within Xcc-8004.608.1at 560.609 kb on - strand, within Xcc-8004.608.1at 560.609 kb on - strand, within Xcc-8004.608.1at 560.770 kb on + strand, within Xcc-8004.608.1at 560.770 kb on + strand, within Xcc-8004.608.1at 560.771 kb on - strand, within Xcc-8004.608.1at 560.771 kb on - strand, within Xcc-8004.608.1at 560.851 kb on + strand, within Xcc-8004.608.1at 560.851 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.884 kb on + strand, within Xcc-8004.608.1at 560.885 kb on - strand, within Xcc-8004.608.1at 560.885 kb on - strand, within Xcc-8004.608.1at 560.891 kb on - strand, within Xcc-8004.608.1at 560.918 kb on + strand, within Xcc-8004.608.1at 560.918 kb on + strand, within Xcc-8004.608.1at 560.918 kb on + strand, within Xcc-8004.608.1at 561.165 kb on + strand, within Xcc-8004.608.1at 561.166 kb on - strand, within Xcc-8004.608.1at 561.331 kb on + strand, within Xcc-8004.608.1at 561.331 kb on + strand, within Xcc-8004.608.1at 561.332 kb on - strand, within Xcc-8004.608.1at 561.349 kb on + strand, within Xcc-8004.608.1at 561.349 kb on + strand, within Xcc-8004.608.1at 561.349 kb on + strand, within Xcc-8004.608.1at 561.350 kb on - strand, within Xcc-8004.608.1at 561.416 kb on - strandat 561.416 kb on - strandat 561.421 kb on + strandat 561.421 kb on + strandat 561.421 kb on + strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.422 kb on - strandat 561.448 kb on + strandat 561.448 kb on + strandat 561.448 kb on + strandat 561.449 kb on - strandat 561.586 kb on - strandat 562.003 kb on - strand, within Xcc-8004.609.1at 562.062 kb on + strand, within Xcc-8004.609.1at 562.063 kb on - strand, within Xcc-8004.609.1at 562.153 kb on - strand, within Xcc-8004.609.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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559,154 + Xcc-8004.607.1 0.58 -0.9
559,154 + Xcc-8004.607.1 0.58 +0.4
559,154 + Xcc-8004.607.1 0.58 -0.4
559,154 + Xcc-8004.607.1 0.58 -0.6
559,154 + Xcc-8004.607.1 0.58 -1.1
559,155 - Xcc-8004.607.1 0.58 +0.1
559,155 - Xcc-8004.607.1 0.58 -0.1
559,677 + +0.2
559,678 - -0.2
559,678 - +0.5
559,747 + -1.1
559,748 - -2.4
559,855 - +0.1
559,928 - +0.8
559,945 - -0.1
559,945 - +0.2
559,950 - -0.8
560,168 - +1.7
560,197 + -3.9
560,197 + +0.2
560,197 + -1.9
560,198 - -3.4
560,198 - -2.7
560,198 - -1.8
560,198 - -2.5
560,198 - -0.3
560,198 - -2.6
560,240 - Xcc-8004.608.1 0.12 -2.5
560,273 - Xcc-8004.608.1 0.14 -2.1
560,273 - Xcc-8004.608.1 0.14 -1.3
560,455 + Xcc-8004.608.1 0.26 -2.4
560,455 + Xcc-8004.608.1 0.26 -2.4
560,455 + Xcc-8004.608.1 0.26 -3.3
560,456 - Xcc-8004.608.1 0.26 -0.6
560,608 + Xcc-8004.608.1 0.37 -1.3
560,608 + Xcc-8004.608.1 0.37 +0.5
560,608 + Xcc-8004.608.1 0.37 -2.2
560,608 + Xcc-8004.608.1 0.37 -2.2
560,608 + Xcc-8004.608.1 0.37 -3.3
560,609 - Xcc-8004.608.1 0.37 -1.1
560,609 - Xcc-8004.608.1 0.37 -2.8
560,770 + Xcc-8004.608.1 0.48 -1.1
560,770 + Xcc-8004.608.1 0.48 -3.0
560,771 - Xcc-8004.608.1 0.48 -2.5
560,771 - Xcc-8004.608.1 0.48 -3.9
560,851 + Xcc-8004.608.1 0.53 +0.3
560,851 + Xcc-8004.608.1 0.53 -1.6
560,884 + Xcc-8004.608.1 0.55 -3.8
560,884 + Xcc-8004.608.1 0.55 -2.3
560,884 + Xcc-8004.608.1 0.55 -0.9
560,884 + Xcc-8004.608.1 0.55 -2.8
560,884 + Xcc-8004.608.1 0.55 -1.4
560,885 - Xcc-8004.608.1 0.56 -3.5
560,885 - Xcc-8004.608.1 0.56 -3.4
560,891 - Xcc-8004.608.1 0.56 -2.8
560,918 + Xcc-8004.608.1 0.58 -1.1
560,918 + Xcc-8004.608.1 0.58 -1.7
560,918 + Xcc-8004.608.1 0.58 -3.5
561,165 + Xcc-8004.608.1 0.75 -2.0
561,166 - Xcc-8004.608.1 0.75 -2.8
561,331 + Xcc-8004.608.1 0.86 -2.2
561,331 + Xcc-8004.608.1 0.86 +0.7
561,332 - Xcc-8004.608.1 0.86 -1.9
561,349 + Xcc-8004.608.1 0.87 -1.6
561,349 + Xcc-8004.608.1 0.87 -2.8
561,349 + Xcc-8004.608.1 0.87 -1.8
561,350 - Xcc-8004.608.1 0.87 -0.1
561,416 - -0.6
561,416 - -1.0
561,421 + -3.0
561,421 + -1.3
561,421 + -2.2
561,422 - -0.8
561,422 - -3.1
561,422 - -1.1
561,422 - -0.9
561,422 - -3.0
561,422 - -2.4
561,448 + -1.1
561,448 + -2.9
561,448 + -3.0
561,449 - -2.4
561,586 - +0.4
562,003 - Xcc-8004.609.1 0.43 +2.3
562,062 + Xcc-8004.609.1 0.49 -1.6
562,063 - Xcc-8004.609.1 0.49 +0.0
562,153 - Xcc-8004.609.1 0.57 -0.2

Or see this region's nucleotide sequence