Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.607.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.605.1 and Xcc-8004.606.1 overlap by 4 nucleotidesXcc-8004.606.1 and Xcc-8004.607.1 are separated by 276 nucleotidesXcc-8004.607.1 and Xcc-8004.608.1 are separated by 482 nucleotides Xcc-8004.605.1: Xcc-8004.605.1 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 557,121 to 557,792 Xcc-8004.605.1 Xcc-8004.606.1: Xcc-8004.606.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 557,789 to 558,280 Xcc-8004.606.1 Xcc-8004.607.1: Xcc-8004.607.1 - hypothetical protein, at 558,557 to 559,582 Xcc-8004.607.1 Xcc-8004.608.1: Xcc-8004.608.1 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 560,065 to 561,540 Xcc-8004.608.1 Position (kb) 558 559 560Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 557.874 kb on - strand, within Xcc-8004.606.1at 557.874 kb on - strand, within Xcc-8004.606.1at 557.999 kb on + strand, within Xcc-8004.606.1at 557.999 kb on + strand, within Xcc-8004.606.1at 557.999 kb on + strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.012 kb on - strand, within Xcc-8004.606.1at 558.012 kb on - strand, within Xcc-8004.606.1at 558.012 kb on - strand, within Xcc-8004.606.1at 558.041 kb on + strand, within Xcc-8004.606.1at 558.041 kb on + strand, within Xcc-8004.606.1at 558.041 kb on + strand, within Xcc-8004.606.1at 558.042 kb on - strand, within Xcc-8004.606.1at 558.191 kb on + strand, within Xcc-8004.606.1at 558.191 kb on + strand, within Xcc-8004.606.1at 558.192 kb on - strand, within Xcc-8004.606.1at 558.192 kb on - strand, within Xcc-8004.606.1at 558.231 kb on + strandat 558.232 kb on - strandat 558.232 kb on - strandat 558.232 kb on - strandat 558.233 kb on + strandat 558.234 kb on - strandat 558.274 kb on + strandat 558.275 kb on - strandat 558.320 kb on + strandat 558.320 kb on + strandat 558.321 kb on - strandat 558.321 kb on - strandat 558.450 kb on + strandat 558.451 kb on - strandat 558.525 kb on + strandat 558.525 kb on + strandat 558.526 kb on - strandat 558.535 kb on + strandat 558.535 kb on + strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.613 kb on + strandat 558.614 kb on - strandat 558.614 kb on - strandat 558.794 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.155 kb on - strand, within Xcc-8004.607.1at 559.155 kb on - strand, within Xcc-8004.607.1at 559.677 kb on + strandat 559.678 kb on - strandat 559.678 kb on - strandat 559.747 kb on + strandat 559.748 kb on - strandat 559.855 kb on - strandat 559.928 kb on - strandat 559.945 kb on - strandat 559.945 kb on - strandat 559.950 kb on - strandat 560.168 kb on - strandat 560.197 kb on + strandat 560.197 kb on + strandat 560.197 kb on + strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.198 kb on - strandat 560.240 kb on - strand, within Xcc-8004.608.1at 560.273 kb on - strand, within Xcc-8004.608.1at 560.273 kb on - strand, within Xcc-8004.608.1at 560.455 kb on + strand, within Xcc-8004.608.1at 560.455 kb on + strand, within Xcc-8004.608.1at 560.455 kb on + strand, within Xcc-8004.608.1at 560.456 kb on - strand, within Xcc-8004.608.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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557,874 - Xcc-8004.606.1 0.17 -0.2
557,874 - Xcc-8004.606.1 0.17 +0.3
557,999 + Xcc-8004.606.1 0.43 -1.1
557,999 + Xcc-8004.606.1 0.43 -0.1
557,999 + Xcc-8004.606.1 0.43 -0.2
558,000 - Xcc-8004.606.1 0.43 -0.6
558,000 - Xcc-8004.606.1 0.43 +0.1
558,000 - Xcc-8004.606.1 0.43 +0.2
558,000 - Xcc-8004.606.1 0.43 +0.2
558,011 + Xcc-8004.606.1 0.45 -1.2
558,011 + Xcc-8004.606.1 0.45 -0.0
558,011 + Xcc-8004.606.1 0.45 +0.7
558,011 + Xcc-8004.606.1 0.45 -1.6
558,012 - Xcc-8004.606.1 0.45 +0.4
558,012 - Xcc-8004.606.1 0.45 +0.5
558,012 - Xcc-8004.606.1 0.45 +1.7
558,041 + Xcc-8004.606.1 0.51 +0.9
558,041 + Xcc-8004.606.1 0.51 -1.8
558,041 + Xcc-8004.606.1 0.51 -0.6
558,042 - Xcc-8004.606.1 0.51 -1.3
558,191 + Xcc-8004.606.1 0.82 -0.5
558,191 + Xcc-8004.606.1 0.82 -1.2
558,192 - Xcc-8004.606.1 0.82 -1.1
558,192 - Xcc-8004.606.1 0.82 +0.4
558,231 + -0.8
558,232 - +1.1
558,232 - +0.1
558,232 - -0.2
558,233 + -1.6
558,234 - -0.1
558,274 + +1.0
558,275 - +0.4
558,320 + +3.0
558,320 + -0.3
558,321 - -1.1
558,321 - +0.4
558,450 + +0.8
558,451 - +0.5
558,525 + +0.1
558,525 + -0.1
558,526 - -0.2
558,535 + +0.7
558,535 + +0.2
558,536 - -0.1
558,536 - -0.7
558,536 - -1.1
558,536 - -1.0
558,585 - -0.8
558,585 - +1.4
558,585 - -0.6
558,613 + -0.8
558,614 - -0.1
558,614 - +0.3
558,794 + Xcc-8004.607.1 0.23 -0.5
559,154 + Xcc-8004.607.1 0.58 -0.9
559,154 + Xcc-8004.607.1 0.58 +0.4
559,154 + Xcc-8004.607.1 0.58 -0.4
559,154 + Xcc-8004.607.1 0.58 -0.6
559,154 + Xcc-8004.607.1 0.58 -1.1
559,155 - Xcc-8004.607.1 0.58 +0.1
559,155 - Xcc-8004.607.1 0.58 -0.1
559,677 + +0.2
559,678 - -0.2
559,678 - +0.5
559,747 + -1.1
559,748 - -2.4
559,855 - +0.1
559,928 - +0.8
559,945 - -0.1
559,945 - +0.2
559,950 - -0.8
560,168 - +1.7
560,197 + -3.9
560,197 + +0.2
560,197 + -1.9
560,198 - -3.4
560,198 - -2.7
560,198 - -1.8
560,198 - -2.5
560,198 - -0.3
560,198 - -2.6
560,240 - Xcc-8004.608.1 0.12 -2.5
560,273 - Xcc-8004.608.1 0.14 -2.1
560,273 - Xcc-8004.608.1 0.14 -1.3
560,455 + Xcc-8004.608.1 0.26 -2.4
560,455 + Xcc-8004.608.1 0.26 -2.4
560,455 + Xcc-8004.608.1 0.26 -3.3
560,456 - Xcc-8004.608.1 0.26 -0.6

Or see this region's nucleotide sequence