Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.606.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.604.1 and Xcc-8004.605.1 are separated by 309 nucleotidesXcc-8004.605.1 and Xcc-8004.606.1 overlap by 4 nucleotidesXcc-8004.606.1 and Xcc-8004.607.1 are separated by 276 nucleotides Xcc-8004.604.1: Xcc-8004.604.1 - membrane protein, putative, at 555,972 to 556,811 Xcc-8004.604.1 Xcc-8004.605.1: Xcc-8004.605.1 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 557,121 to 557,792 Xcc-8004.605.1 Xcc-8004.606.1: Xcc-8004.606.1 - Histone acetyltransferase HPA2 and related acetyltransferases, at 557,789 to 558,280 Xcc-8004.606.1 Xcc-8004.607.1: Xcc-8004.607.1 - hypothetical protein, at 558,557 to 559,582 Xcc-8004.607.1 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2 3at 556.854 kb on - strandat 556.957 kb on - strandat 557.874 kb on - strand, within Xcc-8004.606.1at 557.874 kb on - strand, within Xcc-8004.606.1at 557.999 kb on + strand, within Xcc-8004.606.1at 557.999 kb on + strand, within Xcc-8004.606.1at 557.999 kb on + strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.000 kb on - strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.011 kb on + strand, within Xcc-8004.606.1at 558.012 kb on - strand, within Xcc-8004.606.1at 558.012 kb on - strand, within Xcc-8004.606.1at 558.012 kb on - strand, within Xcc-8004.606.1at 558.041 kb on + strand, within Xcc-8004.606.1at 558.041 kb on + strand, within Xcc-8004.606.1at 558.041 kb on + strand, within Xcc-8004.606.1at 558.042 kb on - strand, within Xcc-8004.606.1at 558.191 kb on + strand, within Xcc-8004.606.1at 558.191 kb on + strand, within Xcc-8004.606.1at 558.192 kb on - strand, within Xcc-8004.606.1at 558.192 kb on - strand, within Xcc-8004.606.1at 558.231 kb on + strandat 558.232 kb on - strandat 558.232 kb on - strandat 558.232 kb on - strandat 558.233 kb on + strandat 558.234 kb on - strandat 558.274 kb on + strandat 558.275 kb on - strandat 558.320 kb on + strandat 558.320 kb on + strandat 558.321 kb on - strandat 558.321 kb on - strandat 558.450 kb on + strandat 558.451 kb on - strandat 558.525 kb on + strandat 558.525 kb on + strandat 558.526 kb on - strandat 558.535 kb on + strandat 558.535 kb on + strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.585 kb on - strandat 558.613 kb on + strandat 558.614 kb on - strandat 558.614 kb on - strandat 558.794 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.154 kb on + strand, within Xcc-8004.607.1at 559.155 kb on - strand, within Xcc-8004.607.1at 559.155 kb on - strand, within Xcc-8004.607.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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556,854 - -0.6
556,957 - +0.2
557,874 - Xcc-8004.606.1 0.17 -0.2
557,874 - Xcc-8004.606.1 0.17 +0.3
557,999 + Xcc-8004.606.1 0.43 -1.1
557,999 + Xcc-8004.606.1 0.43 -0.1
557,999 + Xcc-8004.606.1 0.43 -0.2
558,000 - Xcc-8004.606.1 0.43 -0.6
558,000 - Xcc-8004.606.1 0.43 +0.1
558,000 - Xcc-8004.606.1 0.43 +0.2
558,000 - Xcc-8004.606.1 0.43 +0.2
558,011 + Xcc-8004.606.1 0.45 -1.2
558,011 + Xcc-8004.606.1 0.45 -0.0
558,011 + Xcc-8004.606.1 0.45 +0.7
558,011 + Xcc-8004.606.1 0.45 -1.6
558,012 - Xcc-8004.606.1 0.45 +0.4
558,012 - Xcc-8004.606.1 0.45 +0.5
558,012 - Xcc-8004.606.1 0.45 +1.7
558,041 + Xcc-8004.606.1 0.51 +0.9
558,041 + Xcc-8004.606.1 0.51 -1.8
558,041 + Xcc-8004.606.1 0.51 -0.6
558,042 - Xcc-8004.606.1 0.51 -1.3
558,191 + Xcc-8004.606.1 0.82 -0.5
558,191 + Xcc-8004.606.1 0.82 -1.2
558,192 - Xcc-8004.606.1 0.82 -1.1
558,192 - Xcc-8004.606.1 0.82 +0.4
558,231 + -0.8
558,232 - +1.1
558,232 - +0.1
558,232 - -0.2
558,233 + -1.6
558,234 - -0.1
558,274 + +1.0
558,275 - +0.4
558,320 + +3.0
558,320 + -0.3
558,321 - -1.1
558,321 - +0.4
558,450 + +0.8
558,451 - +0.5
558,525 + +0.1
558,525 + -0.1
558,526 - -0.2
558,535 + +0.7
558,535 + +0.2
558,536 - -0.1
558,536 - -0.7
558,536 - -1.1
558,536 - -1.0
558,585 - -0.8
558,585 - +1.4
558,585 - -0.6
558,613 + -0.8
558,614 - -0.1
558,614 - +0.3
558,794 + Xcc-8004.607.1 0.23 -0.5
559,154 + Xcc-8004.607.1 0.58 -0.9
559,154 + Xcc-8004.607.1 0.58 +0.4
559,154 + Xcc-8004.607.1 0.58 -0.4
559,154 + Xcc-8004.607.1 0.58 -0.6
559,154 + Xcc-8004.607.1 0.58 -1.1
559,155 - Xcc-8004.607.1 0.58 +0.1
559,155 - Xcc-8004.607.1 0.58 -0.1

Or see this region's nucleotide sequence