Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.601.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.599.1 and Xcc-8004.600.1 are separated by 59 nucleotidesXcc-8004.600.1 and Xcc-8004.601.1 are separated by 116 nucleotidesXcc-8004.601.1 and Xcc-8004.602.1 are separated by 335 nucleotidesXcc-8004.602.1 and Xcc-8004.603.1 are separated by 40 nucleotides Xcc-8004.599.1: Xcc-8004.599.1 - FIG01211412: hypothetical protein, at 552,366 to 553,103 Xcc-8004.599.1 Xcc-8004.600.1: Xcc-8004.600.1 - FIG01212762: hypothetical protein, at 553,163 to 553,849 Xcc-8004.600.1 Xcc-8004.601.1: Xcc-8004.601.1 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 553,966 to 554,892 Xcc-8004.601.1 Xcc-8004.602.1: Xcc-8004.602.1 - DnaJ related chaperone, at 555,228 to 555,557 Xcc-8004.602.1 Xcc-8004.603.1: Xcc-8004.603.1 - hypothetical protein, at 555,598 to 555,804 Xcc-8004.603.1 Position (kb) 553 554 555Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 553.083 kb on - strandat 553.083 kb on - strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.165 kb on - strandat 553.165 kb on - strandat 553.166 kb on + strandat 553.182 kb on - strandat 553.182 kb on - strandat 553.231 kb on - strandat 553.231 kb on - strandat 553.231 kb on - strandat 553.231 kb on - strandat 553.302 kb on + strand, within Xcc-8004.600.1at 553.302 kb on + strand, within Xcc-8004.600.1at 553.302 kb on + strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.365 kb on + strand, within Xcc-8004.600.1at 553.365 kb on + strand, within Xcc-8004.600.1at 553.365 kb on + strand, within Xcc-8004.600.1at 553.366 kb on - strand, within Xcc-8004.600.1at 553.366 kb on - strand, within Xcc-8004.600.1at 553.366 kb on - strand, within Xcc-8004.600.1at 553.368 kb on + strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.372 kb on - strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.482 kb on - strand, within Xcc-8004.600.1at 553.482 kb on - strand, within Xcc-8004.600.1at 553.637 kb on + strand, within Xcc-8004.600.1at 553.637 kb on + strand, within Xcc-8004.600.1at 553.865 kb on + strandat 553.929 kb on + strandat 553.929 kb on + strandat 553.929 kb on + strandat 553.930 kb on - strandat 553.932 kb on + strandat 553.932 kb on + strandat 553.933 kb on - strandat 553.933 kb on - strandat 553.933 kb on - strandat 554.010 kb on - strandat 554.032 kb on + strandat 554.033 kb on - strandat 554.090 kb on + strand, within Xcc-8004.601.1at 554.090 kb on + strand, within Xcc-8004.601.1at 554.090 kb on + strand, within Xcc-8004.601.1at 554.091 kb on - strand, within Xcc-8004.601.1at 554.091 kb on - strand, within Xcc-8004.601.1at 554.114 kb on + strand, within Xcc-8004.601.1at 554.198 kb on + strand, within Xcc-8004.601.1at 554.198 kb on + strand, within Xcc-8004.601.1at 554.198 kb on + strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.288 kb on + strand, within Xcc-8004.601.1at 554.288 kb on + strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.406 kb on + strand, within Xcc-8004.601.1at 554.407 kb on - strand, within Xcc-8004.601.1at 554.422 kb on + strand, within Xcc-8004.601.1at 554.456 kb on + strand, within Xcc-8004.601.1at 554.486 kb on + strand, within Xcc-8004.601.1at 554.487 kb on - strand, within Xcc-8004.601.1at 554.487 kb on - strand, within Xcc-8004.601.1at 554.513 kb on + strand, within Xcc-8004.601.1at 554.771 kb on + strand, within Xcc-8004.601.1at 554.771 kb on + strand, within Xcc-8004.601.1at 554.772 kb on - strand, within Xcc-8004.601.1at 554.902 kb on + strandat 554.902 kb on + strandat 554.902 kb on + strandat 554.902 kb on + strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.967 kb on - strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 555.045 kb on + strandat 555.046 kb on - strandat 555.122 kb on + strandat 555.129 kb on + strandat 555.370 kb on - strand, within Xcc-8004.602.1at 555.444 kb on + strand, within Xcc-8004.602.1at 555.444 kb on + strand, within Xcc-8004.602.1at 555.445 kb on - strand, within Xcc-8004.602.1at 555.525 kb on + strandat 555.587 kb on + strandat 555.587 kb on + strandat 555.588 kb on - strandat 555.588 kb on - strandat 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.705 kb on - strand, within Xcc-8004.603.1at 555.705 kb on - strand, within Xcc-8004.603.1at 555.781 kb on + strand, within Xcc-8004.603.1at 555.781 kb on + strand, within Xcc-8004.603.1at 555.882 kb on + strandat 555.883 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
553,083 - -0.1
553,083 - -0.1
553,164 + -0.1
553,164 + -0.7
553,164 + +0.6
553,164 + -0.1
553,164 + -1.3
553,164 + +0.4
553,165 - +1.2
553,165 - -0.7
553,166 + +1.4
553,182 - -0.8
553,182 - +0.2
553,231 - -0.2
553,231 - -0.6
553,231 - -1.4
553,231 - -0.7
553,302 + Xcc-8004.600.1 0.20 +0.9
553,302 + Xcc-8004.600.1 0.20 +1.3
553,302 + Xcc-8004.600.1 0.20 -0.1
553,303 - Xcc-8004.600.1 0.20 -0.5
553,303 - Xcc-8004.600.1 0.20 -0.9
553,303 - Xcc-8004.600.1 0.20 +0.4
553,303 - Xcc-8004.600.1 0.20 +0.6
553,303 - Xcc-8004.600.1 0.20 +0.1
553,365 + Xcc-8004.600.1 0.29 +0.2
553,365 + Xcc-8004.600.1 0.29 -0.1
553,365 + Xcc-8004.600.1 0.29 -1.2
553,366 - Xcc-8004.600.1 0.30 -1.6
553,366 - Xcc-8004.600.1 0.30 -0.1
553,366 - Xcc-8004.600.1 0.30 -0.4
553,368 + Xcc-8004.600.1 0.30 -1.0
553,369 - Xcc-8004.600.1 0.30 -0.8
553,369 - Xcc-8004.600.1 0.30 +0.4
553,369 - Xcc-8004.600.1 0.30 +0.2
553,369 - Xcc-8004.600.1 0.30 -0.4
553,369 - Xcc-8004.600.1 0.30 +0.4
553,371 + Xcc-8004.600.1 0.30 +0.1
553,371 + Xcc-8004.600.1 0.30 -1.1
553,371 + Xcc-8004.600.1 0.30 +0.6
553,371 + Xcc-8004.600.1 0.30 -0.1
553,372 - Xcc-8004.600.1 0.30 +0.6
553,481 + Xcc-8004.600.1 0.46 +1.2
553,481 + Xcc-8004.600.1 0.46 +1.7
553,481 + Xcc-8004.600.1 0.46 +0.1
553,481 + Xcc-8004.600.1 0.46 +0.1
553,482 - Xcc-8004.600.1 0.46 +0.0
553,482 - Xcc-8004.600.1 0.46 -0.7
553,637 + Xcc-8004.600.1 0.69 -0.2
553,637 + Xcc-8004.600.1 0.69 -0.4
553,865 + -0.4
553,929 + -0.9
553,929 + -1.1
553,929 + -0.7
553,930 - -1.0
553,932 + +1.0
553,932 + -0.2
553,933 - +0.1
553,933 - +0.5
553,933 - -0.1
554,010 - -1.6
554,032 + -3.1
554,033 - -0.3
554,090 + Xcc-8004.601.1 0.13 +0.4
554,090 + Xcc-8004.601.1 0.13 -2.2
554,090 + Xcc-8004.601.1 0.13 +0.5
554,091 - Xcc-8004.601.1 0.13 -1.1
554,091 - Xcc-8004.601.1 0.13 -1.9
554,114 + Xcc-8004.601.1 0.16 +0.7
554,198 + Xcc-8004.601.1 0.25 -1.9
554,198 + Xcc-8004.601.1 0.25 -1.5
554,198 + Xcc-8004.601.1 0.25 -1.5
554,199 - Xcc-8004.601.1 0.25 -2.3
554,199 - Xcc-8004.601.1 0.25 +0.1
554,199 - Xcc-8004.601.1 0.25 -0.9
554,199 - Xcc-8004.601.1 0.25 -1.8
554,199 - Xcc-8004.601.1 0.25 -0.6
554,288 + Xcc-8004.601.1 0.35 -2.1
554,288 + Xcc-8004.601.1 0.35 -2.6
554,289 - Xcc-8004.601.1 0.35 -1.0
554,289 - Xcc-8004.601.1 0.35 -2.6
554,289 - Xcc-8004.601.1 0.35 -2.8
554,406 + Xcc-8004.601.1 0.47 -0.5
554,407 - Xcc-8004.601.1 0.48 -1.9
554,422 + Xcc-8004.601.1 0.49 -3.8
554,456 + Xcc-8004.601.1 0.53 -1.7
554,486 + Xcc-8004.601.1 0.56 -0.3
554,487 - Xcc-8004.601.1 0.56 -2.5
554,487 - Xcc-8004.601.1 0.56 -2.9
554,513 + Xcc-8004.601.1 0.59 -2.1
554,771 + Xcc-8004.601.1 0.87 -2.7
554,771 + Xcc-8004.601.1 0.87 -1.6
554,772 - Xcc-8004.601.1 0.87 -4.1
554,902 + -2.4
554,902 + -0.6
554,902 + +0.1
554,902 + -0.9
554,903 - +0.7
554,903 - -1.7
554,903 - -0.3
554,903 - -0.3
554,967 - -0.0
554,971 + -0.0
554,971 + -0.7
554,971 + -1.3
554,971 + -0.1
554,972 - +0.2
554,972 - +0.7
554,972 - +0.5
554,972 - -0.3
554,972 - +0.1
554,972 - -0.4
554,972 - -0.6
554,972 - -2.4
554,972 - -0.1
554,972 - +0.3
554,972 - -0.1
554,972 - -0.4
555,045 + -0.5
555,046 - +0.3
555,122 + -0.7
555,129 + -0.2
555,370 - Xcc-8004.602.1 0.43 +0.9
555,444 + Xcc-8004.602.1 0.65 -1.2
555,444 + Xcc-8004.602.1 0.65 -0.4
555,445 - Xcc-8004.602.1 0.66 -0.1
555,525 + -1.9
555,587 + -0.5
555,587 + -0.0
555,588 - +0.8
555,588 - -1.6
555,704 + Xcc-8004.603.1 0.51 -2.1
555,704 + Xcc-8004.603.1 0.51 -0.4
555,704 + Xcc-8004.603.1 0.51 +1.5
555,704 + Xcc-8004.603.1 0.51 -0.8
555,705 - Xcc-8004.603.1 0.52 -1.6
555,705 - Xcc-8004.603.1 0.52 -0.8
555,781 + Xcc-8004.603.1 0.88 +0.3
555,781 + Xcc-8004.603.1 0.88 +0.3
555,882 + +0.2
555,883 - -1.7

Or see this region's nucleotide sequence