Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.577.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.576.1 and Xcc-8004.577.1 are separated by 489 nucleotidesXcc-8004.577.1 and Xcc-8004.578.1 are separated by 41 nucleotides Xcc-8004.576.1: Xcc-8004.576.1 - FIG01210281: hypothetical protein, at 534,766 to 535,356 Xcc-8004.576.1 Xcc-8004.577.1: Xcc-8004.577.1 - Transcriptional regulator, MarR family, at 535,846 to 536,415 Xcc-8004.577.1 Xcc-8004.578.1: Xcc-8004.578.1 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 536,457 to 537,572 Xcc-8004.578.1 Position (kb) 535 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 534.970 kb on + strand, within Xcc-8004.576.1at 534.970 kb on + strand, within Xcc-8004.576.1at 534.970 kb on + strand, within Xcc-8004.576.1at 534.971 kb on - strand, within Xcc-8004.576.1at 534.971 kb on - strand, within Xcc-8004.576.1at 535.300 kb on + strandat 535.300 kb on + strandat 535.301 kb on - strandat 535.376 kb on + strandat 535.376 kb on + strandat 535.376 kb on + strandat 535.504 kb on - strandat 535.524 kb on + strandat 535.524 kb on + strandat 535.524 kb on + strandat 535.524 kb on + strandat 535.524 kb on + strandat 535.524 kb on + strandat 535.524 kb on + strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.525 kb on - strandat 535.677 kb on + strandat 535.677 kb on + strandat 535.677 kb on + strandat 535.677 kb on + strandat 535.677 kb on + strandat 535.677 kb on + strandat 535.678 kb on - strandat 535.678 kb on - strandat 535.727 kb on + strandat 535.727 kb on + strandat 535.727 kb on + strandat 535.727 kb on + strandat 535.727 kb on + strandat 535.727 kb on + strandat 535.728 kb on - strandat 535.728 kb on - strandat 535.985 kb on + strand, within Xcc-8004.577.1at 535.986 kb on - strand, within Xcc-8004.577.1at 535.986 kb on - strand, within Xcc-8004.577.1at 535.986 kb on - strand, within Xcc-8004.577.1at 535.986 kb on - strand, within Xcc-8004.577.1at 535.986 kb on - strand, within Xcc-8004.577.1at 535.986 kb on - strand, within Xcc-8004.577.1at 536.153 kb on + strand, within Xcc-8004.577.1at 536.153 kb on + strand, within Xcc-8004.577.1at 536.153 kb on + strand, within Xcc-8004.577.1at 536.153 kb on + strand, within Xcc-8004.577.1at 536.154 kb on - strand, within Xcc-8004.577.1at 536.154 kb on - strand, within Xcc-8004.577.1at 536.201 kb on + strand, within Xcc-8004.577.1at 536.201 kb on + strand, within Xcc-8004.577.1at 536.202 kb on - strand, within Xcc-8004.577.1at 536.422 kb on + strandat 536.423 kb on - strandat 536.439 kb on + strandat 536.598 kb on + strand, within Xcc-8004.578.1at 536.598 kb on + strand, within Xcc-8004.578.1at 536.599 kb on - strand, within Xcc-8004.578.1at 536.658 kb on + strand, within Xcc-8004.578.1at 536.889 kb on + strand, within Xcc-8004.578.1at 536.889 kb on + strand, within Xcc-8004.578.1at 536.890 kb on - strand, within Xcc-8004.578.1at 536.890 kb on - strand, within Xcc-8004.578.1at 536.890 kb on - strand, within Xcc-8004.578.1at 536.890 kb on - strand, within Xcc-8004.578.1at 536.890 kb on - strand, within Xcc-8004.578.1at 536.890 kb on - strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.925 kb on + strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.926 kb on - strand, within Xcc-8004.578.1at 536.937 kb on + strand, within Xcc-8004.578.1at 536.937 kb on + strand, within Xcc-8004.578.1at 536.937 kb on + strand, within Xcc-8004.578.1at 536.937 kb on + strand, within Xcc-8004.578.1at 536.937 kb on + strand, within Xcc-8004.578.1at 536.937 kb on + strand, within Xcc-8004.578.1at 536.938 kb on - strand, within Xcc-8004.578.1at 536.938 kb on - strand, within Xcc-8004.578.1at 537.015 kb on + strand, within Xcc-8004.578.1at 537.015 kb on + strand, within Xcc-8004.578.1at 537.015 kb on + strand, within Xcc-8004.578.1at 537.015 kb on + strand, within Xcc-8004.578.1at 537.015 kb on + strand, within Xcc-8004.578.1at 537.016 kb on - strand, within Xcc-8004.578.1at 537.016 kb on - strand, within Xcc-8004.578.1at 537.045 kb on + strand, within Xcc-8004.578.1at 537.045 kb on + strand, within Xcc-8004.578.1at 537.046 kb on - strand, within Xcc-8004.578.1at 537.046 kb on - strand, within Xcc-8004.578.1at 537.048 kb on + strand, within Xcc-8004.578.1at 537.048 kb on + strand, within Xcc-8004.578.1at 537.048 kb on + strand, within Xcc-8004.578.1at 537.049 kb on - strand, within Xcc-8004.578.1at 537.049 kb on - strand, within Xcc-8004.578.1at 537.049 kb on - strand, within Xcc-8004.578.1at 537.049 kb on - strand, within Xcc-8004.578.1at 537.081 kb on + strand, within Xcc-8004.578.1at 537.198 kb on + strand, within Xcc-8004.578.1at 537.198 kb on + strand, within Xcc-8004.578.1at 537.199 kb on - strand, within Xcc-8004.578.1at 537.210 kb on + strand, within Xcc-8004.578.1at 537.210 kb on + strand, within Xcc-8004.578.1at 537.210 kb on + strand, within Xcc-8004.578.1at 537.211 kb on - strand, within Xcc-8004.578.1at 537.211 kb on - strand, within Xcc-8004.578.1at 537.211 kb on - strand, within Xcc-8004.578.1at 537.211 kb on - strand, within Xcc-8004.578.1at 537.211 kb on - strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.258 kb on + strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.259 kb on - strand, within Xcc-8004.578.1at 537.318 kb on + strand, within Xcc-8004.578.1at 537.318 kb on + strand, within Xcc-8004.578.1at 537.318 kb on + strand, within Xcc-8004.578.1at 537.318 kb on + strand, within Xcc-8004.578.1at 537.318 kb on + strand, within Xcc-8004.578.1at 537.318 kb on + strand, within Xcc-8004.578.1at 537.319 kb on - strand, within Xcc-8004.578.1at 537.319 kb on - strand, within Xcc-8004.578.1at 537.319 kb on - strand, within Xcc-8004.578.1at 537.319 kb on - strand, within Xcc-8004.578.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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534,970 + Xcc-8004.576.1 0.35 -0.6
534,970 + Xcc-8004.576.1 0.35 +0.2
534,970 + Xcc-8004.576.1 0.35 -0.2
534,971 - Xcc-8004.576.1 0.35 -0.5
534,971 - Xcc-8004.576.1 0.35 +0.3
535,300 + +2.4
535,300 + +1.7
535,301 - +0.7
535,376 + -3.2
535,376 + -0.8
535,376 + -1.3
535,504 - -0.1
535,524 + -0.2
535,524 + -0.6
535,524 + +0.8
535,524 + -0.9
535,524 + -0.1
535,524 + -0.6
535,524 + +0.1
535,525 - -0.9
535,525 - -0.1
535,525 - +0.5
535,525 - -0.4
535,525 - +0.4
535,525 - +0.6
535,525 - -0.6
535,525 - +0.0
535,525 - +0.2
535,677 + +0.7
535,677 + -0.4
535,677 + -0.4
535,677 + -0.4
535,677 + -0.4
535,677 + -0.2
535,678 - +0.6
535,678 - +0.0
535,727 + -0.0
535,727 + -1.1
535,727 + -0.1
535,727 + -0.0
535,727 + -0.3
535,727 + -1.0
535,728 - -1.4
535,728 - -0.7
535,985 + Xcc-8004.577.1 0.24 -2.4
535,986 - Xcc-8004.577.1 0.25 -1.9
535,986 - Xcc-8004.577.1 0.25 -1.4
535,986 - Xcc-8004.577.1 0.25 -3.0
535,986 - Xcc-8004.577.1 0.25 -1.6
535,986 - Xcc-8004.577.1 0.25 +0.1
535,986 - Xcc-8004.577.1 0.25 -1.7
536,153 + Xcc-8004.577.1 0.54 -1.8
536,153 + Xcc-8004.577.1 0.54 -1.9
536,153 + Xcc-8004.577.1 0.54 -1.9
536,153 + Xcc-8004.577.1 0.54 +0.1
536,154 - Xcc-8004.577.1 0.54 -1.7
536,154 - Xcc-8004.577.1 0.54 -3.1
536,201 + Xcc-8004.577.1 0.62 -2.6
536,201 + Xcc-8004.577.1 0.62 -1.4
536,202 - Xcc-8004.577.1 0.62 -0.8
536,422 + -1.4
536,423 - +1.4
536,439 + +0.1
536,598 + Xcc-8004.578.1 0.13 +0.7
536,598 + Xcc-8004.578.1 0.13 +0.3
536,599 - Xcc-8004.578.1 0.13 +1.1
536,658 + Xcc-8004.578.1 0.18 +0.3
536,889 + Xcc-8004.578.1 0.39 +0.1
536,889 + Xcc-8004.578.1 0.39 -0.9
536,890 - Xcc-8004.578.1 0.39 +2.3
536,890 - Xcc-8004.578.1 0.39 +1.5
536,890 - Xcc-8004.578.1 0.39 +1.0
536,890 - Xcc-8004.578.1 0.39 +1.1
536,890 - Xcc-8004.578.1 0.39 +1.3
536,890 - Xcc-8004.578.1 0.39 -0.2
536,925 + Xcc-8004.578.1 0.42 -0.9
536,925 + Xcc-8004.578.1 0.42 -1.8
536,925 + Xcc-8004.578.1 0.42 +0.5
536,925 + Xcc-8004.578.1 0.42 +0.1
536,925 + Xcc-8004.578.1 0.42 +0.3
536,925 + Xcc-8004.578.1 0.42 +0.7
536,925 + Xcc-8004.578.1 0.42 +1.7
536,925 + Xcc-8004.578.1 0.42 -0.9
536,926 - Xcc-8004.578.1 0.42 +0.2
536,926 - Xcc-8004.578.1 0.42 +0.5
536,926 - Xcc-8004.578.1 0.42 +1.1
536,926 - Xcc-8004.578.1 0.42 +0.9
536,926 - Xcc-8004.578.1 0.42 +0.5
536,926 - Xcc-8004.578.1 0.42 +0.7
536,926 - Xcc-8004.578.1 0.42 -0.2
536,926 - Xcc-8004.578.1 0.42 +1.1
536,926 - Xcc-8004.578.1 0.42 +1.0
536,937 + Xcc-8004.578.1 0.43 +0.4
536,937 + Xcc-8004.578.1 0.43 +0.1
536,937 + Xcc-8004.578.1 0.43 -0.4
536,937 + Xcc-8004.578.1 0.43 -0.9
536,937 + Xcc-8004.578.1 0.43 -0.4
536,937 + Xcc-8004.578.1 0.43 +1.0
536,938 - Xcc-8004.578.1 0.43 -0.6
536,938 - Xcc-8004.578.1 0.43 +1.5
537,015 + Xcc-8004.578.1 0.50 -0.1
537,015 + Xcc-8004.578.1 0.50 -0.2
537,015 + Xcc-8004.578.1 0.50 -0.6
537,015 + Xcc-8004.578.1 0.50 +0.7
537,015 + Xcc-8004.578.1 0.50 -1.2
537,016 - Xcc-8004.578.1 0.50 +0.7
537,016 - Xcc-8004.578.1 0.50 +0.7
537,045 + Xcc-8004.578.1 0.53 -0.8
537,045 + Xcc-8004.578.1 0.53 +1.9
537,046 - Xcc-8004.578.1 0.53 +1.2
537,046 - Xcc-8004.578.1 0.53 +0.4
537,048 + Xcc-8004.578.1 0.53 -0.1
537,048 + Xcc-8004.578.1 0.53 -1.3
537,048 + Xcc-8004.578.1 0.53 +0.9
537,049 - Xcc-8004.578.1 0.53 +0.8
537,049 - Xcc-8004.578.1 0.53 +0.9
537,049 - Xcc-8004.578.1 0.53 +1.4
537,049 - Xcc-8004.578.1 0.53 +0.9
537,081 + Xcc-8004.578.1 0.56 +1.7
537,198 + Xcc-8004.578.1 0.66 +0.5
537,198 + Xcc-8004.578.1 0.66 -0.1
537,199 - Xcc-8004.578.1 0.66 -0.0
537,210 + Xcc-8004.578.1 0.67 -0.4
537,210 + Xcc-8004.578.1 0.67 -0.9
537,210 + Xcc-8004.578.1 0.67 -0.4
537,211 - Xcc-8004.578.1 0.68 -0.5
537,211 - Xcc-8004.578.1 0.68 +1.1
537,211 - Xcc-8004.578.1 0.68 +0.6
537,211 - Xcc-8004.578.1 0.68 +1.3
537,211 - Xcc-8004.578.1 0.68 -0.7
537,258 + Xcc-8004.578.1 0.72 +0.1
537,258 + Xcc-8004.578.1 0.72 -1.1
537,258 + Xcc-8004.578.1 0.72 +1.3
537,258 + Xcc-8004.578.1 0.72 -1.1
537,258 + Xcc-8004.578.1 0.72 -2.3
537,258 + Xcc-8004.578.1 0.72 -0.3
537,258 + Xcc-8004.578.1 0.72 +0.3
537,258 + Xcc-8004.578.1 0.72 -0.8
537,258 + Xcc-8004.578.1 0.72 +0.3
537,259 - Xcc-8004.578.1 0.72 +2.4
537,259 - Xcc-8004.578.1 0.72 +2.2
537,259 - Xcc-8004.578.1 0.72 +0.7
537,259 - Xcc-8004.578.1 0.72 +0.6
537,259 - Xcc-8004.578.1 0.72 +1.2
537,259 - Xcc-8004.578.1 0.72 +0.8
537,259 - Xcc-8004.578.1 0.72 +0.8
537,259 - Xcc-8004.578.1 0.72 +0.6
537,259 - Xcc-8004.578.1 0.72 +0.7
537,259 - Xcc-8004.578.1 0.72 +0.8
537,318 + Xcc-8004.578.1 0.77 -0.6
537,318 + Xcc-8004.578.1 0.77 +0.6
537,318 + Xcc-8004.578.1 0.77 -0.4
537,318 + Xcc-8004.578.1 0.77 +0.4
537,318 + Xcc-8004.578.1 0.77 +0.4
537,318 + Xcc-8004.578.1 0.77 +0.4
537,319 - Xcc-8004.578.1 0.77 -3.1
537,319 - Xcc-8004.578.1 0.77 +0.6
537,319 - Xcc-8004.578.1 0.77 +0.4
537,319 - Xcc-8004.578.1 0.77 +0.1

Or see this region's nucleotide sequence