Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.573.1 and Xcc-8004.574.1 are separated by 409 nucleotides Xcc-8004.574.1 and Xcc-8004.576.1 are separated by 11 nucleotides
Xcc-8004.573.1: Xcc-8004.573.1 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 531,928 to 532,824
Xcc-8004.573.1
Xcc-8004.574.1: Xcc-8004.574.1 - Di-/tripeptide transporter, at 533,234 to 534,754
Xcc-8004.574.1
Xcc-8004.576.1: Xcc-8004.576.1 - FIG01210281: hypothetical protein, at 534,766 to 535,356
Xcc-8004.576.1
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.264 kb on + strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.265 kb on - strand, within Xcc-8004.573.1 at 532.324 kb on + strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.379 kb on - strand, within Xcc-8004.573.1 at 532.412 kb on + strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.413 kb on - strand, within Xcc-8004.573.1 at 532.433 kb on - strand, within Xcc-8004.573.1 at 532.433 kb on - strand, within Xcc-8004.573.1 at 532.450 kb on + strand, within Xcc-8004.573.1 at 532.451 kb on - strand, within Xcc-8004.573.1 at 532.486 kb on + strand, within Xcc-8004.573.1 at 532.486 kb on + strand, within Xcc-8004.573.1 at 532.487 kb on - strand, within Xcc-8004.573.1 at 532.487 kb on - strand, within Xcc-8004.573.1 at 532.556 kb on - strand, within Xcc-8004.573.1 at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.764 kb on + strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.765 kb on - strand at 532.772 kb on + strand at 532.772 kb on + strand at 532.772 kb on + strand at 532.895 kb on + strand at 532.895 kb on + strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.896 kb on - strand at 532.951 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.976 kb on + strand at 532.977 kb on - strand at 532.977 kb on - strand at 532.977 kb on - strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.992 kb on + strand at 532.993 kb on - strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.150 kb on + strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.151 kb on - strand at 533.161 kb on + strand at 533.161 kb on + strand at 533.161 kb on + strand at 533.162 kb on - strand at 533.162 kb on - strand at 533.162 kb on - strand at 533.217 kb on + strand at 533.218 kb on - strand at 533.218 kb on - strand at 533.218 kb on - strand at 533.375 kb on + strand at 533.375 kb on + strand at 533.376 kb on - strand at 533.376 kb on - strand at 533.376 kb on - strand at 533.402 kb on + strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.403 kb on - strand, within Xcc-8004.574.1 at 533.462 kb on + strand, within Xcc-8004.574.1 at 533.463 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.472 kb on - strand, within Xcc-8004.574.1 at 533.486 kb on + strand, within Xcc-8004.574.1 at 533.486 kb on + strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.487 kb on - strand, within Xcc-8004.574.1 at 533.510 kb on + strand, within Xcc-8004.574.1 at 533.510 kb on + strand, within Xcc-8004.574.1 at 533.511 kb on - strand, within Xcc-8004.574.1 at 533.545 kb on + strand, within Xcc-8004.574.1 at 533.546 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.691 kb on - strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.735 kb on + strand, within Xcc-8004.574.1 at 533.736 kb on - strand, within Xcc-8004.574.1 at 533.736 kb on - strand, within Xcc-8004.574.1 at 533.825 kb on + strand, within Xcc-8004.574.1 at 533.826 kb on - strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.993 kb on + strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 533.994 kb on - strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.461 kb on + strand, within Xcc-8004.574.1 at 534.462 kb on - strand, within Xcc-8004.574.1 at 534.462 kb on - strand, within Xcc-8004.574.1 at 534.663 kb on - strand at 534.664 kb on + strand at 534.664 kb on + strand at 534.664 kb on + strand at 534.665 kb on - strand at 534.665 kb on - strand at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.970 kb on + strand, within Xcc-8004.576.1 at 534.971 kb on - strand, within Xcc-8004.576.1 at 534.971 kb on - strand, within Xcc-8004.576.1 at 535.300 kb on + strand at 535.300 kb on + strand at 535.301 kb on - strand at 535.376 kb on + strand at 535.376 kb on + strand at 535.376 kb on + strand at 535.504 kb on - strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.524 kb on + strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.525 kb on - strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.677 kb on + strand at 535.678 kb on - strand at 535.678 kb on - strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.727 kb on + strand at 535.728 kb on - strand at 535.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 532,264 + Xcc-8004.573.1 0.37 -1.1 532,264 + Xcc-8004.573.1 0.37 -2.0 532,264 + Xcc-8004.573.1 0.37 -1.2 532,264 + Xcc-8004.573.1 0.37 +0.4 532,264 + Xcc-8004.573.1 0.37 +0.8 532,264 + Xcc-8004.573.1 0.37 -1.4 532,264 + Xcc-8004.573.1 0.37 -1.5 532,264 + Xcc-8004.573.1 0.37 -1.1 532,264 + Xcc-8004.573.1 0.37 -0.1 532,264 + Xcc-8004.573.1 0.37 -1.6 532,264 + Xcc-8004.573.1 0.37 +0.8 532,264 + Xcc-8004.573.1 0.37 -0.2 532,265 - Xcc-8004.573.1 0.38 +0.4 532,265 - Xcc-8004.573.1 0.38 -1.0 532,265 - Xcc-8004.573.1 0.38 -1.0 532,265 - Xcc-8004.573.1 0.38 +0.2 532,265 - Xcc-8004.573.1 0.38 +0.4 532,265 - Xcc-8004.573.1 0.38 +0.2 532,324 + Xcc-8004.573.1 0.44 +0.3 532,379 - Xcc-8004.573.1 0.50 -0.6 532,379 - Xcc-8004.573.1 0.50 +1.0 532,379 - Xcc-8004.573.1 0.50 -0.7 532,412 + Xcc-8004.573.1 0.54 -1.1 532,413 - Xcc-8004.573.1 0.54 -1.9 532,413 - Xcc-8004.573.1 0.54 -2.4 532,413 - Xcc-8004.573.1 0.54 -1.2 532,433 - Xcc-8004.573.1 0.56 -0.1 532,433 - Xcc-8004.573.1 0.56 -0.8 532,450 + Xcc-8004.573.1 0.58 -0.3 532,451 - Xcc-8004.573.1 0.58 -0.3 532,486 + Xcc-8004.573.1 0.62 +0.3 532,486 + Xcc-8004.573.1 0.62 -1.0 532,487 - Xcc-8004.573.1 0.62 -2.3 532,487 - Xcc-8004.573.1 0.62 -0.2 532,556 - Xcc-8004.573.1 0.70 +0.3 532,764 + -0.8 532,764 + +0.2 532,764 + +1.7 532,764 + +0.9 532,764 + -1.2 532,764 + +0.2 532,764 + -0.3 532,764 + +0.4 532,764 + -0.5 532,764 + +0.2 532,764 + -0.1 532,764 + -0.6 532,764 + +0.1 532,764 + -1.1 532,765 - +0.5 532,765 - -0.6 532,765 - +0.3 532,765 - -0.7 532,765 - +0.5 532,765 - -0.1 532,765 - +0.3 532,765 - +0.2 532,765 - -0.6 532,765 - -0.5 532,765 - +0.1 532,765 - -0.6 532,772 + +0.1 532,772 + -2.0 532,772 + -0.3 532,895 + -0.0 532,895 + -0.1 532,896 - +0.2 532,896 - +0.1 532,896 - +0.1 532,896 - -0.5 532,896 - +0.1 532,896 - -0.3 532,951 + -0.2 532,976 + +0.2 532,976 + -1.1 532,976 + -0.6 532,976 + +1.1 532,976 + -0.5 532,977 - +1.0 532,977 - -0.2 532,977 - -1.3 532,992 + +0.5 532,992 + +0.7 532,992 + -1.0 532,992 + +0.6 532,993 - -0.2 533,150 + -0.0 533,150 + -1.5 533,150 + -0.1 533,150 + -0.6 533,150 + -0.3 533,150 + -0.1 533,150 + -0.8 533,150 + -0.6 533,150 + -1.5 533,151 - +0.4 533,151 - +0.3 533,151 - +0.8 533,151 - +0.1 533,161 + -0.3 533,161 + -1.0 533,161 + -0.5 533,162 - +1.2 533,162 - -0.6 533,162 - +2.7 533,217 + +0.4 533,218 - -0.1 533,218 - -0.8 533,218 - +0.5 533,375 + -0.3 533,375 + -1.5 533,376 - +1.3 533,376 - +0.8 533,376 - -0.6 533,402 + Xcc-8004.574.1 0.11 +0.1 533,403 - Xcc-8004.574.1 0.11 -0.3 533,403 - Xcc-8004.574.1 0.11 +0.1 533,403 - Xcc-8004.574.1 0.11 +0.4 533,403 - Xcc-8004.574.1 0.11 -0.1 533,403 - Xcc-8004.574.1 0.11 +1.0 533,403 - Xcc-8004.574.1 0.11 -0.6 533,462 + Xcc-8004.574.1 0.15 +0.5 533,463 - Xcc-8004.574.1 0.15 -0.9 533,472 - Xcc-8004.574.1 0.16 +0.1 533,472 - Xcc-8004.574.1 0.16 -0.5 533,472 - Xcc-8004.574.1 0.16 -0.6 533,486 + Xcc-8004.574.1 0.17 +0.7 533,486 + Xcc-8004.574.1 0.17 -1.1 533,487 - Xcc-8004.574.1 0.17 -1.9 533,487 - Xcc-8004.574.1 0.17 +0.5 533,487 - Xcc-8004.574.1 0.17 +0.2 533,510 + Xcc-8004.574.1 0.18 -1.8 533,510 + Xcc-8004.574.1 0.18 -1.1 533,511 - Xcc-8004.574.1 0.18 -0.2 533,545 + Xcc-8004.574.1 0.20 -1.3 533,546 - Xcc-8004.574.1 0.21 -0.9 533,691 - Xcc-8004.574.1 0.30 -1.3 533,691 - Xcc-8004.574.1 0.30 +0.9 533,691 - Xcc-8004.574.1 0.30 -0.6 533,735 + Xcc-8004.574.1 0.33 +0.7 533,735 + Xcc-8004.574.1 0.33 -0.3 533,735 + Xcc-8004.574.1 0.33 -1.2 533,735 + Xcc-8004.574.1 0.33 -0.6 533,735 + Xcc-8004.574.1 0.33 +0.1 533,736 - Xcc-8004.574.1 0.33 -0.3 533,736 - Xcc-8004.574.1 0.33 +0.4 533,825 + Xcc-8004.574.1 0.39 -1.9 533,826 - Xcc-8004.574.1 0.39 +1.2 533,993 + Xcc-8004.574.1 0.50 -0.9 533,993 + Xcc-8004.574.1 0.50 -1.8 533,993 + Xcc-8004.574.1 0.50 -0.3 533,993 + Xcc-8004.574.1 0.50 -1.3 533,994 - Xcc-8004.574.1 0.50 +0.1 533,994 - Xcc-8004.574.1 0.50 -0.9 533,994 - Xcc-8004.574.1 0.50 +0.5 533,994 - Xcc-8004.574.1 0.50 -1.5 534,461 + Xcc-8004.574.1 0.81 +1.7 534,461 + Xcc-8004.574.1 0.81 +0.1 534,461 + Xcc-8004.574.1 0.81 -1.1 534,461 + Xcc-8004.574.1 0.81 -0.3 534,462 - Xcc-8004.574.1 0.81 -1.3 534,462 - Xcc-8004.574.1 0.81 -0.2 534,663 - -0.3 534,664 + +2.7 534,664 + -1.8 534,664 + +1.7 534,665 - -0.3 534,665 - -0.7 534,970 + Xcc-8004.576.1 0.35 -0.6 534,970 + Xcc-8004.576.1 0.35 +0.2 534,970 + Xcc-8004.576.1 0.35 -0.2 534,971 - Xcc-8004.576.1 0.35 -0.5 534,971 - Xcc-8004.576.1 0.35 +0.3 535,300 + +2.4 535,300 + +1.7 535,301 - +0.7 535,376 + -3.2 535,376 + -0.8 535,376 + -1.3 535,504 - -0.1 535,524 + -0.2 535,524 + -0.6 535,524 + +0.8 535,524 + -0.9 535,524 + -0.1 535,524 + -0.6 535,524 + +0.1 535,525 - -0.9 535,525 - -0.1 535,525 - +0.5 535,525 - -0.4 535,525 - +0.4 535,525 - +0.6 535,525 - -0.6 535,525 - +0.0 535,525 - +0.2 535,677 + +0.7 535,677 + -0.4 535,677 + -0.4 535,677 + -0.4 535,677 + -0.4 535,677 + -0.2 535,678 - +0.6 535,678 - +0.0 535,727 + -0.0 535,727 + -1.1 535,727 + -0.1 535,727 + -0.0 535,727 + -0.3 535,727 + -1.0 535,728 - -1.4 535,728 - -0.7
Or see this region's nucleotide sequence