Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5221.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5220.1 and Xcc-8004.5221.1 are separated by 54 nucleotidesXcc-8004.5221.1 and Xcc-8004.5222.1 overlap by 29 nucleotidesXcc-8004.5222.1 and Xcc-8004.5223.1 overlap by 14 nucleotides Xcc-8004.5220.1: Xcc-8004.5220.1 - Glucan 1,4-beta-glucosidase, at 4,956,768 to 4,959,464 Xcc-8004.5220.1 Xcc-8004.5221.1: Xcc-8004.5221.1 - D-mannonate oxidoreductase (EC 1.1.1.57), at 4,959,519 to 4,961,039 Xcc-8004.5221.1 Xcc-8004.5222.1: Xcc-8004.5222.1 - hypothetical protein, at 4,961,011 to 4,961,256 Xcc-8004.5222.1 Xcc-8004.5223.1: Xcc-8004.5223.1 - Prophage Lp2 protein 6, at 4,961,243 to 4,962,349 Xcc-8004.5223.1 Position (kb) 4959 4960 4961 4962Strain fitness (log2 ratio) -2 -1 0 1 2at 4958.547 kb on + strand, within Xcc-8004.5220.1at 4958.547 kb on + strand, within Xcc-8004.5220.1at 4958.568 kb on + strand, within Xcc-8004.5220.1at 4958.568 kb on + strand, within Xcc-8004.5220.1at 4958.569 kb on - strand, within Xcc-8004.5220.1at 4958.728 kb on - strand, within Xcc-8004.5220.1at 4958.728 kb on - strand, within Xcc-8004.5220.1at 4958.788 kb on + strand, within Xcc-8004.5220.1at 4958.788 kb on + strand, within Xcc-8004.5220.1at 4958.788 kb on + strand, within Xcc-8004.5220.1at 4958.788 kb on + strand, within Xcc-8004.5220.1at 4958.789 kb on - strand, within Xcc-8004.5220.1at 4958.985 kb on + strand, within Xcc-8004.5220.1at 4958.985 kb on + strand, within Xcc-8004.5220.1at 4958.985 kb on + strand, within Xcc-8004.5220.1at 4958.986 kb on - strand, within Xcc-8004.5220.1at 4959.021 kb on + strand, within Xcc-8004.5220.1at 4959.021 kb on + strand, within Xcc-8004.5220.1at 4959.022 kb on - strand, within Xcc-8004.5220.1at 4959.042 kb on + strand, within Xcc-8004.5220.1at 4959.043 kb on - strand, within Xcc-8004.5220.1at 4959.043 kb on - strand, within Xcc-8004.5220.1at 4959.043 kb on - strand, within Xcc-8004.5220.1at 4959.049 kb on - strand, within Xcc-8004.5220.1at 4959.094 kb on - strand, within Xcc-8004.5220.1at 4959.108 kb on + strand, within Xcc-8004.5220.1at 4959.109 kb on - strand, within Xcc-8004.5220.1at 4959.219 kb on + strandat 4959.220 kb on - strandat 4959.347 kb on + strandat 4959.352 kb on - strandat 4959.616 kb on + strandat 4959.642 kb on + strandat 4959.642 kb on + strandat 4959.643 kb on - strandat 4959.643 kb on - strandat 4959.643 kb on - strandat 4959.679 kb on + strand, within Xcc-8004.5221.1at 4959.679 kb on + strand, within Xcc-8004.5221.1at 4959.679 kb on + strand, within Xcc-8004.5221.1at 4959.679 kb on + strand, within Xcc-8004.5221.1at 4959.718 kb on - strand, within Xcc-8004.5221.1at 4959.973 kb on - strand, within Xcc-8004.5221.1at 4960.080 kb on + strand, within Xcc-8004.5221.1at 4960.081 kb on - strand, within Xcc-8004.5221.1at 4960.341 kb on + strand, within Xcc-8004.5221.1at 4960.341 kb on + strand, within Xcc-8004.5221.1at 4960.341 kb on + strand, within Xcc-8004.5221.1at 4960.342 kb on - strand, within Xcc-8004.5221.1at 4960.483 kb on - strand, within Xcc-8004.5221.1at 4960.855 kb on + strand, within Xcc-8004.5221.1at 4960.855 kb on + strand, within Xcc-8004.5221.1at 4960.855 kb on + strand, within Xcc-8004.5221.1at 4960.855 kb on + strand, within Xcc-8004.5221.1at 4960.856 kb on - strand, within Xcc-8004.5221.1at 4960.856 kb on - strand, within Xcc-8004.5221.1at 4960.856 kb on - strand, within Xcc-8004.5221.1at 4960.980 kb on + strandat 4960.980 kb on + strandat 4960.980 kb on + strandat 4960.981 kb on - strandat 4960.981 kb on - strandat 4961.014 kb on + strandat 4961.015 kb on - strandat 4961.015 kb on - strandat 4961.015 kb on - strandat 4961.015 kb on - strandat 4961.015 kb on - strandat 4961.015 kb on - strandat 4961.015 kb on - strandat 4961.015 kb on - strandat 4961.037 kb on + strandat 4961.037 kb on + strandat 4961.037 kb on + strandat 4961.038 kb on - strandat 4961.038 kb on - strandat 4961.038 kb on - strandat 4961.038 kb on - strandat 4961.038 kb on - strandat 4961.038 kb on - strandat 4961.050 kb on + strand, within Xcc-8004.5222.1at 4961.089 kb on - strand, within Xcc-8004.5222.1at 4961.182 kb on - strand, within Xcc-8004.5222.1at 4961.208 kb on + strand, within Xcc-8004.5222.1at 4961.216 kb on - strand, within Xcc-8004.5222.1at 4961.240 kb on + strandat 4961.240 kb on + strandat 4961.252 kb on - strandat 4961.306 kb on - strandat 4961.364 kb on - strand, within Xcc-8004.5223.1at 4961.364 kb on - strand, within Xcc-8004.5223.1at 4961.364 kb on - strand, within Xcc-8004.5223.1at 4961.441 kb on + strand, within Xcc-8004.5223.1at 4961.442 kb on - strand, within Xcc-8004.5223.1at 4961.442 kb on - strand, within Xcc-8004.5223.1at 4961.485 kb on + strand, within Xcc-8004.5223.1at 4961.486 kb on - strand, within Xcc-8004.5223.1at 4961.505 kb on + strand, within Xcc-8004.5223.1at 4961.505 kb on + strand, within Xcc-8004.5223.1at 4961.505 kb on + strand, within Xcc-8004.5223.1at 4961.505 kb on + strand, within Xcc-8004.5223.1at 4961.506 kb on - strand, within Xcc-8004.5223.1at 4961.529 kb on + strand, within Xcc-8004.5223.1at 4961.529 kb on + strand, within Xcc-8004.5223.1at 4961.537 kb on + strand, within Xcc-8004.5223.1at 4961.588 kb on + strand, within Xcc-8004.5223.1at 4961.589 kb on - strand, within Xcc-8004.5223.1at 4961.607 kb on + strand, within Xcc-8004.5223.1at 4961.608 kb on - strand, within Xcc-8004.5223.1at 4961.718 kb on + strand, within Xcc-8004.5223.1at 4961.718 kb on + strand, within Xcc-8004.5223.1at 4961.744 kb on + strand, within Xcc-8004.5223.1at 4961.854 kb on + strand, within Xcc-8004.5223.1at 4961.854 kb on + strand, within Xcc-8004.5223.1at 4961.939 kb on - strand, within Xcc-8004.5223.1at 4962.007 kb on + strand, within Xcc-8004.5223.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,958,547 + Xcc-8004.5220.1 0.66 +0.4
4,958,547 + Xcc-8004.5220.1 0.66 +0.2
4,958,568 + Xcc-8004.5220.1 0.67 +0.9
4,958,568 + Xcc-8004.5220.1 0.67 +0.2
4,958,569 - Xcc-8004.5220.1 0.67 +1.1
4,958,728 - Xcc-8004.5220.1 0.73 -0.3
4,958,728 - Xcc-8004.5220.1 0.73 -0.2
4,958,788 + Xcc-8004.5220.1 0.75 -0.7
4,958,788 + Xcc-8004.5220.1 0.75 -0.1
4,958,788 + Xcc-8004.5220.1 0.75 -0.9
4,958,788 + Xcc-8004.5220.1 0.75 -1.6
4,958,789 - Xcc-8004.5220.1 0.75 -0.5
4,958,985 + Xcc-8004.5220.1 0.82 -0.8
4,958,985 + Xcc-8004.5220.1 0.82 -0.6
4,958,985 + Xcc-8004.5220.1 0.82 -0.2
4,958,986 - Xcc-8004.5220.1 0.82 -1.1
4,959,021 + Xcc-8004.5220.1 0.84 +0.8
4,959,021 + Xcc-8004.5220.1 0.84 -1.9
4,959,022 - Xcc-8004.5220.1 0.84 -1.7
4,959,042 + Xcc-8004.5220.1 0.84 +0.9
4,959,043 - Xcc-8004.5220.1 0.84 -0.9
4,959,043 - Xcc-8004.5220.1 0.84 +0.5
4,959,043 - Xcc-8004.5220.1 0.84 -0.2
4,959,049 - Xcc-8004.5220.1 0.85 +0.0
4,959,094 - Xcc-8004.5220.1 0.86 +1.3
4,959,108 + Xcc-8004.5220.1 0.87 +0.2
4,959,109 - Xcc-8004.5220.1 0.87 +0.0
4,959,219 + -0.1
4,959,220 - -0.3
4,959,347 + -0.0
4,959,352 - -0.4
4,959,616 + -1.1
4,959,642 + +0.2
4,959,642 + -0.7
4,959,643 - -0.7
4,959,643 - -0.4
4,959,643 - -1.0
4,959,679 + Xcc-8004.5221.1 0.11 +0.4
4,959,679 + Xcc-8004.5221.1 0.11 +0.4
4,959,679 + Xcc-8004.5221.1 0.11 -0.3
4,959,679 + Xcc-8004.5221.1 0.11 -0.4
4,959,718 - Xcc-8004.5221.1 0.13 +0.4
4,959,973 - Xcc-8004.5221.1 0.30 -0.5
4,960,080 + Xcc-8004.5221.1 0.37 +0.1
4,960,081 - Xcc-8004.5221.1 0.37 -0.1
4,960,341 + Xcc-8004.5221.1 0.54 +0.4
4,960,341 + Xcc-8004.5221.1 0.54 -1.0
4,960,341 + Xcc-8004.5221.1 0.54 -0.8
4,960,342 - Xcc-8004.5221.1 0.54 -1.5
4,960,483 - Xcc-8004.5221.1 0.63 -0.2
4,960,855 + Xcc-8004.5221.1 0.88 +0.8
4,960,855 + Xcc-8004.5221.1 0.88 -1.4
4,960,855 + Xcc-8004.5221.1 0.88 -0.6
4,960,855 + Xcc-8004.5221.1 0.88 -0.4
4,960,856 - Xcc-8004.5221.1 0.88 +0.7
4,960,856 - Xcc-8004.5221.1 0.88 -0.1
4,960,856 - Xcc-8004.5221.1 0.88 +0.5
4,960,980 + +0.2
4,960,980 + +0.6
4,960,980 + +0.5
4,960,981 - -0.4
4,960,981 - +0.1
4,961,014 + -0.4
4,961,015 - -0.5
4,961,015 - -0.2
4,961,015 - -0.1
4,961,015 - +0.0
4,961,015 - +0.4
4,961,015 - +0.6
4,961,015 - -0.2
4,961,015 - -0.5
4,961,037 + -1.0
4,961,037 + -0.7
4,961,037 + +0.2
4,961,038 - -0.4
4,961,038 - -1.3
4,961,038 - +0.7
4,961,038 - -0.1
4,961,038 - +0.9
4,961,038 - +0.1
4,961,050 + Xcc-8004.5222.1 0.16 -0.6
4,961,089 - Xcc-8004.5222.1 0.32 +0.5
4,961,182 - Xcc-8004.5222.1 0.70 +0.1
4,961,208 + Xcc-8004.5222.1 0.80 -1.3
4,961,216 - Xcc-8004.5222.1 0.83 +0.1
4,961,240 + +0.9
4,961,240 + +0.4
4,961,252 - +0.6
4,961,306 - +0.4
4,961,364 - Xcc-8004.5223.1 0.11 +0.7
4,961,364 - Xcc-8004.5223.1 0.11 +0.1
4,961,364 - Xcc-8004.5223.1 0.11 +0.3
4,961,441 + Xcc-8004.5223.1 0.18 -0.4
4,961,442 - Xcc-8004.5223.1 0.18 +0.5
4,961,442 - Xcc-8004.5223.1 0.18 -0.6
4,961,485 + Xcc-8004.5223.1 0.22 -0.6
4,961,486 - Xcc-8004.5223.1 0.22 -1.3
4,961,505 + Xcc-8004.5223.1 0.24 -1.2
4,961,505 + Xcc-8004.5223.1 0.24 +0.1
4,961,505 + Xcc-8004.5223.1 0.24 -1.0
4,961,505 + Xcc-8004.5223.1 0.24 +0.3
4,961,506 - Xcc-8004.5223.1 0.24 -0.3
4,961,529 + Xcc-8004.5223.1 0.26 +0.1
4,961,529 + Xcc-8004.5223.1 0.26 +0.2
4,961,537 + Xcc-8004.5223.1 0.27 +0.8
4,961,588 + Xcc-8004.5223.1 0.31 +0.3
4,961,589 - Xcc-8004.5223.1 0.31 +1.7
4,961,607 + Xcc-8004.5223.1 0.33 -0.3
4,961,608 - Xcc-8004.5223.1 0.33 +0.6
4,961,718 + Xcc-8004.5223.1 0.43 -0.9
4,961,718 + Xcc-8004.5223.1 0.43 +0.7
4,961,744 + Xcc-8004.5223.1 0.45 +0.3
4,961,854 + Xcc-8004.5223.1 0.55 -0.9
4,961,854 + Xcc-8004.5223.1 0.55 -0.3
4,961,939 - Xcc-8004.5223.1 0.63 +0.3
4,962,007 + Xcc-8004.5223.1 0.69 +1.9

Or see this region's nucleotide sequence