Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5167.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,901,836	+		Xcc-8004.5166.1	0.72	+1.3
4,901,865	-		Xcc-8004.5166.1	0.76	+0.2
4,901,980	+		Xcc-8004.5166.1	0.89	-0.6
4,901,980	+		Xcc-8004.5166.1	0.89	-1.1
4,901,981	-		Xcc-8004.5166.1	0.89	-0.8
4,901,981	-		Xcc-8004.5166.1	0.89	-1.5
4,902,080	+				-0.4
4,902,081	-				+0.3
4,902,135	+				+0.7
4,902,136	-				+0.7
4,902,136	-				+0.2
4,902,136	-				-0.8
4,902,200	+				+0.3
4,902,204	+				-0.7
4,902,204	+				+0.7
4,902,248	+				-0.7
4,902,271	+				-0.2
4,902,271	+				-0.5
4,902,271	+				-0.8
4,902,271	+				+0.5
4,902,272	-				+0.1
4,902,272	-				-3.2
4,902,277	+				-0.7
4,902,277	+				-0.1
4,902,278	-				-0.1
4,902,278	-				+0.4
4,902,278	-				+0.5
4,902,323	+				-0.3
4,902,422	+				-0.1
4,902,422	+				-0.2
4,902,423	-				-0.1
4,902,423	-				-0.9
4,902,523	-				-1.5
4,902,523	-				-0.4
4,902,536	+				-0.6
4,902,669	+				-0.4
4,902,670	-				-0.1
4,902,670	-				+0.1
4,903,018	-		Xcc-8004.5167.1	0.34	-1.1
4,903,126	-		Xcc-8004.5167.1	0.42	-0.7
4,903,502	-		Xcc-8004.5167.1	0.71	-0.7
4,903,502	-		Xcc-8004.5167.1	0.71	+0.1
4,903,502	-		Xcc-8004.5167.1	0.71	-0.9
4,903,517	-		Xcc-8004.5167.1	0.72	+0.1
4,903,767	+				+1.7
4,903,887	+				-2.4
4,903,887	+				-2.0
4,903,888	-				-0.1
4,903,888	-				-0.6
4,904,072	-				+0.4
4,904,072	-				-0.8
4,904,082	+				+0.2
4,904,083	-				+0.6
4,904,094	+				-0.2
4,904,394	-				+0.2
4,904,580	-		Xcc-8004.5168.1	0.34	+0.8
4,904,671	-				+0.3
4,904,671	-				+1.7
4,904,671	-				-0.5
4,904,671	-				+0.1
4,904,671	-				+1.3
4,904,877	-				-0.0