Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5048.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5047.1 and Xcc-8004.5048.1 overlap by 4 nucleotidesXcc-8004.5048.1 and Xcc-8004.5049.1 overlap by 1 nucleotidesXcc-8004.5049.1 and Xcc-8004.5051.1 are separated by 115 nucleotides Xcc-8004.5047.1: Xcc-8004.5047.1 - ABC-type multidrug transport system, ATPase component, at 4,786,873 to 4,787,871 Xcc-8004.5047.1 Xcc-8004.5048.1: Xcc-8004.5048.1 - permease, at 4,787,868 to 4,788,680 Xcc-8004.5048.1 Xcc-8004.5049.1: Xcc-8004.5049.1 - FIG01211140: hypothetical protein, at 4,788,680 to 4,789,432 Xcc-8004.5049.1 Xcc-8004.5051.1: Xcc-8004.5051.1 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 4,789,548 to 4,790,486 Xcc-8004.5051.1 Position (kb) 4787 4788 4789Strain fitness (log2 ratio) -3 -2 -1 0 1at 4786.933 kb on + strandat 4786.933 kb on + strandat 4787.197 kb on + strand, within Xcc-8004.5047.1at 4787.476 kb on + strand, within Xcc-8004.5047.1at 4787.477 kb on - strand, within Xcc-8004.5047.1at 4787.667 kb on + strand, within Xcc-8004.5047.1at 4787.668 kb on - strand, within Xcc-8004.5047.1at 4788.021 kb on + strand, within Xcc-8004.5048.1at 4788.021 kb on + strand, within Xcc-8004.5048.1at 4788.081 kb on + strand, within Xcc-8004.5048.1at 4788.081 kb on + strand, within Xcc-8004.5048.1at 4788.081 kb on + strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.234 kb on + strand, within Xcc-8004.5048.1at 4788.234 kb on + strand, within Xcc-8004.5048.1at 4788.234 kb on + strand, within Xcc-8004.5048.1at 4788.397 kb on - strand, within Xcc-8004.5048.1at 4788.456 kb on + strand, within Xcc-8004.5048.1at 4788.457 kb on - strand, within Xcc-8004.5048.1at 4788.474 kb on + strand, within Xcc-8004.5048.1at 4788.474 kb on + strand, within Xcc-8004.5048.1at 4788.475 kb on - strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.535 kb on - strand, within Xcc-8004.5048.1at 4788.597 kb on + strand, within Xcc-8004.5048.1at 4788.598 kb on - strand, within Xcc-8004.5048.1at 4788.644 kb on - strandat 4788.698 kb on + strandat 4788.698 kb on + strandat 4788.698 kb on + strandat 4788.699 kb on - strandat 4788.800 kb on + strand, within Xcc-8004.5049.1at 4788.801 kb on - strand, within Xcc-8004.5049.1at 4788.801 kb on - strand, within Xcc-8004.5049.1at 4789.082 kb on + strand, within Xcc-8004.5049.1at 4789.082 kb on + strand, within Xcc-8004.5049.1at 4789.083 kb on - strand, within Xcc-8004.5049.1at 4789.085 kb on + strand, within Xcc-8004.5049.1at 4789.085 kb on + strand, within Xcc-8004.5049.1at 4789.085 kb on + strand, within Xcc-8004.5049.1at 4789.085 kb on + strand, within Xcc-8004.5049.1at 4789.086 kb on - strand, within Xcc-8004.5049.1at 4789.230 kb on + strand, within Xcc-8004.5049.1at 4789.230 kb on + strand, within Xcc-8004.5049.1at 4789.231 kb on - strand, within Xcc-8004.5049.1at 4789.231 kb on - strand, within Xcc-8004.5049.1at 4789.231 kb on - strand, within Xcc-8004.5049.1at 4789.231 kb on - strand, within Xcc-8004.5049.1at 4789.285 kb on - strand, within Xcc-8004.5049.1at 4789.285 kb on - strand, within Xcc-8004.5049.1at 4789.547 kb on + strandat 4789.548 kb on - strandat 4789.548 kb on - strandat 4789.548 kb on - strandat 4789.588 kb on - strandat 4789.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,786,933 + -1.7
4,786,933 + -0.2
4,787,197 + Xcc-8004.5047.1 0.32 -2.1
4,787,476 + Xcc-8004.5047.1 0.60 -2.6
4,787,477 - Xcc-8004.5047.1 0.60 -0.8
4,787,667 + Xcc-8004.5047.1 0.79 -1.8
4,787,668 - Xcc-8004.5047.1 0.80 -0.3
4,788,021 + Xcc-8004.5048.1 0.19 +1.1
4,788,021 + Xcc-8004.5048.1 0.19 -1.4
4,788,081 + Xcc-8004.5048.1 0.26 -2.8
4,788,081 + Xcc-8004.5048.1 0.26 -2.0
4,788,081 + Xcc-8004.5048.1 0.26 -2.6
4,788,082 - Xcc-8004.5048.1 0.26 -1.8
4,788,082 - Xcc-8004.5048.1 0.26 -0.4
4,788,082 - Xcc-8004.5048.1 0.26 -0.4
4,788,082 - Xcc-8004.5048.1 0.26 -2.4
4,788,234 + Xcc-8004.5048.1 0.45 -0.6
4,788,234 + Xcc-8004.5048.1 0.45 -3.3
4,788,234 + Xcc-8004.5048.1 0.45 -0.6
4,788,397 - Xcc-8004.5048.1 0.65 -2.9
4,788,456 + Xcc-8004.5048.1 0.72 +0.3
4,788,457 - Xcc-8004.5048.1 0.72 -0.9
4,788,474 + Xcc-8004.5048.1 0.75 -0.4
4,788,474 + Xcc-8004.5048.1 0.75 -0.6
4,788,475 - Xcc-8004.5048.1 0.75 -1.5
4,788,534 + Xcc-8004.5048.1 0.82 -0.6
4,788,534 + Xcc-8004.5048.1 0.82 -1.7
4,788,534 + Xcc-8004.5048.1 0.82 -2.1
4,788,534 + Xcc-8004.5048.1 0.82 -1.2
4,788,535 - Xcc-8004.5048.1 0.82 -1.2
4,788,597 + Xcc-8004.5048.1 0.90 -0.4
4,788,598 - Xcc-8004.5048.1 0.90 -2.5
4,788,644 - -1.4
4,788,698 + -0.0
4,788,698 + +1.1
4,788,698 + +0.7
4,788,699 - -0.8
4,788,800 + Xcc-8004.5049.1 0.16 -2.2
4,788,801 - Xcc-8004.5049.1 0.16 -0.6
4,788,801 - Xcc-8004.5049.1 0.16 +0.1
4,789,082 + Xcc-8004.5049.1 0.53 +0.2
4,789,082 + Xcc-8004.5049.1 0.53 +0.2
4,789,083 - Xcc-8004.5049.1 0.54 +0.1
4,789,085 + Xcc-8004.5049.1 0.54 +0.3
4,789,085 + Xcc-8004.5049.1 0.54 -0.8
4,789,085 + Xcc-8004.5049.1 0.54 +0.1
4,789,085 + Xcc-8004.5049.1 0.54 +0.5
4,789,086 - Xcc-8004.5049.1 0.54 -1.1
4,789,230 + Xcc-8004.5049.1 0.73 -1.8
4,789,230 + Xcc-8004.5049.1 0.73 -1.3
4,789,231 - Xcc-8004.5049.1 0.73 -0.4
4,789,231 - Xcc-8004.5049.1 0.73 -0.7
4,789,231 - Xcc-8004.5049.1 0.73 -0.3
4,789,231 - Xcc-8004.5049.1 0.73 +0.6
4,789,285 - Xcc-8004.5049.1 0.80 -1.6
4,789,285 - Xcc-8004.5049.1 0.80 -0.1
4,789,547 + -1.2
4,789,548 - +1.1
4,789,548 - +1.4
4,789,548 - +0.4
4,789,588 - +0.2
4,789,588 - +0.8

Or see this region's nucleotide sequence