Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5047.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5045.1 and Xcc-8004.5046.1 are separated by 71 nucleotidesXcc-8004.5046.1 and Xcc-8004.5047.1 are separated by 100 nucleotidesXcc-8004.5047.1 and Xcc-8004.5048.1 overlap by 4 nucleotidesXcc-8004.5048.1 and Xcc-8004.5049.1 overlap by 1 nucleotides Xcc-8004.5045.1: Xcc-8004.5045.1 - Beta-xylosidase (EC 3.2.1.37), at 4,784,368 to 4,785,933 Xcc-8004.5045.1 Xcc-8004.5046.1: Xcc-8004.5046.1 - Phenol hydroxylase, at 4,786,005 to 4,786,772 Xcc-8004.5046.1 Xcc-8004.5047.1: Xcc-8004.5047.1 - ABC-type multidrug transport system, ATPase component, at 4,786,873 to 4,787,871 Xcc-8004.5047.1 Xcc-8004.5048.1: Xcc-8004.5048.1 - permease, at 4,787,868 to 4,788,680 Xcc-8004.5048.1 Xcc-8004.5049.1: Xcc-8004.5049.1 - FIG01211140: hypothetical protein, at 4,788,680 to 4,789,432 Xcc-8004.5049.1 Position (kb) 4786 4787 4788Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4785.874 kb on - strandat 4786.039 kb on + strandat 4786.039 kb on + strandat 4786.039 kb on + strandat 4786.040 kb on - strandat 4786.040 kb on - strandat 4786.129 kb on + strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.130 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.184 kb on - strand, within Xcc-8004.5046.1at 4786.194 kb on + strand, within Xcc-8004.5046.1at 4786.195 kb on - strand, within Xcc-8004.5046.1at 4786.292 kb on - strand, within Xcc-8004.5046.1at 4786.423 kb on + strand, within Xcc-8004.5046.1at 4786.607 kb on - strand, within Xcc-8004.5046.1at 4786.607 kb on - strand, within Xcc-8004.5046.1at 4786.782 kb on + strandat 4786.782 kb on + strandat 4786.821 kb on + strandat 4786.821 kb on + strandat 4786.821 kb on + strandat 4786.821 kb on + strandat 4786.822 kb on - strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.823 kb on + strandat 4786.824 kb on - strandat 4786.824 kb on - strandat 4786.824 kb on - strandat 4786.824 kb on - strandat 4786.827 kb on - strandat 4786.933 kb on + strandat 4786.933 kb on + strandat 4787.197 kb on + strand, within Xcc-8004.5047.1at 4787.476 kb on + strand, within Xcc-8004.5047.1at 4787.477 kb on - strand, within Xcc-8004.5047.1at 4787.667 kb on + strand, within Xcc-8004.5047.1at 4787.668 kb on - strand, within Xcc-8004.5047.1at 4788.021 kb on + strand, within Xcc-8004.5048.1at 4788.021 kb on + strand, within Xcc-8004.5048.1at 4788.081 kb on + strand, within Xcc-8004.5048.1at 4788.081 kb on + strand, within Xcc-8004.5048.1at 4788.081 kb on + strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.082 kb on - strand, within Xcc-8004.5048.1at 4788.234 kb on + strand, within Xcc-8004.5048.1at 4788.234 kb on + strand, within Xcc-8004.5048.1at 4788.234 kb on + strand, within Xcc-8004.5048.1at 4788.397 kb on - strand, within Xcc-8004.5048.1at 4788.456 kb on + strand, within Xcc-8004.5048.1at 4788.457 kb on - strand, within Xcc-8004.5048.1at 4788.474 kb on + strand, within Xcc-8004.5048.1at 4788.474 kb on + strand, within Xcc-8004.5048.1at 4788.475 kb on - strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.534 kb on + strand, within Xcc-8004.5048.1at 4788.535 kb on - strand, within Xcc-8004.5048.1at 4788.597 kb on + strand, within Xcc-8004.5048.1at 4788.598 kb on - strand, within Xcc-8004.5048.1at 4788.644 kb on - strandat 4788.698 kb on + strandat 4788.698 kb on + strandat 4788.698 kb on + strandat 4788.699 kb on - strandat 4788.800 kb on + strand, within Xcc-8004.5049.1at 4788.801 kb on - strand, within Xcc-8004.5049.1at 4788.801 kb on - strand, within Xcc-8004.5049.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,785,874 - -1.0
4,786,039 + -0.5
4,786,039 + -0.3
4,786,039 + -2.3
4,786,040 - -1.0
4,786,040 - +0.9
4,786,129 + Xcc-8004.5046.1 0.16 -1.0
4,786,130 - Xcc-8004.5046.1 0.16 +2.1
4,786,130 - Xcc-8004.5046.1 0.16 -0.6
4,786,130 - Xcc-8004.5046.1 0.16 -0.3
4,786,130 - Xcc-8004.5046.1 0.16 -1.6
4,786,184 - Xcc-8004.5046.1 0.23 +0.5
4,786,184 - Xcc-8004.5046.1 0.23 -0.1
4,786,184 - Xcc-8004.5046.1 0.23 +0.1
4,786,184 - Xcc-8004.5046.1 0.23 +0.0
4,786,194 + Xcc-8004.5046.1 0.25 -0.4
4,786,195 - Xcc-8004.5046.1 0.25 +1.0
4,786,292 - Xcc-8004.5046.1 0.37 -1.1
4,786,423 + Xcc-8004.5046.1 0.54 +0.9
4,786,607 - Xcc-8004.5046.1 0.78 -0.3
4,786,607 - Xcc-8004.5046.1 0.78 +1.9
4,786,782 + -0.4
4,786,782 + -0.2
4,786,821 + -0.1
4,786,821 + +0.3
4,786,821 + +0.6
4,786,821 + -0.3
4,786,822 - +0.9
4,786,823 + -0.3
4,786,823 + +0.7
4,786,823 + +0.1
4,786,823 + -0.7
4,786,823 + +0.2
4,786,823 + -0.2
4,786,823 + -0.0
4,786,824 - -1.1
4,786,824 - +0.5
4,786,824 - -0.3
4,786,824 - -0.0
4,786,827 - +0.0
4,786,933 + -1.7
4,786,933 + -0.2
4,787,197 + Xcc-8004.5047.1 0.32 -2.1
4,787,476 + Xcc-8004.5047.1 0.60 -2.6
4,787,477 - Xcc-8004.5047.1 0.60 -0.8
4,787,667 + Xcc-8004.5047.1 0.79 -1.8
4,787,668 - Xcc-8004.5047.1 0.80 -0.3
4,788,021 + Xcc-8004.5048.1 0.19 +1.1
4,788,021 + Xcc-8004.5048.1 0.19 -1.4
4,788,081 + Xcc-8004.5048.1 0.26 -2.8
4,788,081 + Xcc-8004.5048.1 0.26 -2.0
4,788,081 + Xcc-8004.5048.1 0.26 -2.6
4,788,082 - Xcc-8004.5048.1 0.26 -1.8
4,788,082 - Xcc-8004.5048.1 0.26 -0.4
4,788,082 - Xcc-8004.5048.1 0.26 -0.4
4,788,082 - Xcc-8004.5048.1 0.26 -2.4
4,788,234 + Xcc-8004.5048.1 0.45 -0.6
4,788,234 + Xcc-8004.5048.1 0.45 -3.3
4,788,234 + Xcc-8004.5048.1 0.45 -0.6
4,788,397 - Xcc-8004.5048.1 0.65 -2.9
4,788,456 + Xcc-8004.5048.1 0.72 +0.3
4,788,457 - Xcc-8004.5048.1 0.72 -0.9
4,788,474 + Xcc-8004.5048.1 0.75 -0.4
4,788,474 + Xcc-8004.5048.1 0.75 -0.6
4,788,475 - Xcc-8004.5048.1 0.75 -1.5
4,788,534 + Xcc-8004.5048.1 0.82 -0.6
4,788,534 + Xcc-8004.5048.1 0.82 -1.7
4,788,534 + Xcc-8004.5048.1 0.82 -2.1
4,788,534 + Xcc-8004.5048.1 0.82 -1.2
4,788,535 - Xcc-8004.5048.1 0.82 -1.2
4,788,597 + Xcc-8004.5048.1 0.90 -0.4
4,788,598 - Xcc-8004.5048.1 0.90 -2.5
4,788,644 - -1.4
4,788,698 + -0.0
4,788,698 + +1.1
4,788,698 + +0.7
4,788,699 - -0.8
4,788,800 + Xcc-8004.5049.1 0.16 -2.2
4,788,801 - Xcc-8004.5049.1 0.16 -0.6
4,788,801 - Xcc-8004.5049.1 0.16 +0.1

Or see this region's nucleotide sequence