Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5031.1 and Xcc-8004.5033.1 are separated by 32 nucleotides Xcc-8004.5033.1 and Xcc-8004.5034.1 overlap by 11 nucleotides Xcc-8004.5034.1 and Xcc-8004.5035.1 are separated by 9 nucleotides
Xcc-8004.5031.1: Xcc-8004.5031.1 - hypothetical protein, at 4,770,011 to 4,773,010
Xcc-8004.5031.1
Xcc-8004.5033.1: Xcc-8004.5033.1 - hypothetical protein, at 4,773,043 to 4,773,885
Xcc-8004.5033.1
Xcc-8004.5034.1: Xcc-8004.5034.1 - Pass1-related protein, at 4,773,875 to 4,774,888
Xcc-8004.5034.1
Xcc-8004.5035.1: Xcc-8004.5035.1 - Tryptophan halogenase, at 4,774,898 to 4,776,460
Xcc-8004.5035.1
Position (kb) 4773
4774
4775 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.954 kb on + strand at 4772.955 kb on - strand at 4772.955 kb on - strand at 4772.955 kb on - strand at 4772.978 kb on + strand at 4772.978 kb on + strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.979 kb on - strand at 4772.996 kb on + strand at 4772.996 kb on + strand at 4772.996 kb on + strand at 4772.996 kb on + strand at 4772.997 kb on - strand at 4772.997 kb on - strand at 4772.997 kb on - strand at 4772.997 kb on - strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.077 kb on + strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.078 kb on - strand at 4773.257 kb on - strand, within Xcc-8004.5033.1 at 4773.257 kb on - strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.430 kb on + strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.431 kb on - strand, within Xcc-8004.5033.1 at 4773.730 kb on + strand, within Xcc-8004.5033.1 at 4773.730 kb on + strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.731 kb on - strand, within Xcc-8004.5033.1 at 4773.753 kb on - strand, within Xcc-8004.5033.1 at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.814 kb on + strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.815 kb on - strand at 4773.816 kb on + strand at 4773.816 kb on + strand at 4773.817 kb on - strand at 4773.817 kb on - strand at 4774.037 kb on + strand, within Xcc-8004.5034.1 at 4774.037 kb on + strand, within Xcc-8004.5034.1 at 4774.038 kb on - strand, within Xcc-8004.5034.1 at 4774.112 kb on + strand, within Xcc-8004.5034.1 at 4774.112 kb on + strand, within Xcc-8004.5034.1 at 4774.113 kb on - strand, within Xcc-8004.5034.1 at 4774.113 kb on - strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.220 kb on + strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.221 kb on - strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.247 kb on + strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.248 kb on - strand, within Xcc-8004.5034.1 at 4774.430 kb on + strand, within Xcc-8004.5034.1 at 4774.430 kb on + strand, within Xcc-8004.5034.1 at 4774.431 kb on - strand, within Xcc-8004.5034.1 at 4774.483 kb on + strand, within Xcc-8004.5034.1 at 4774.661 kb on + strand, within Xcc-8004.5034.1 at 4774.661 kb on + strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.662 kb on - strand, within Xcc-8004.5034.1 at 4774.760 kb on + strand, within Xcc-8004.5034.1 at 4774.760 kb on + strand, within Xcc-8004.5034.1 at 4774.760 kb on + strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.761 kb on - strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.764 kb on + strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4774.765 kb on - strand, within Xcc-8004.5034.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.198 kb on + strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.199 kb on - strand, within Xcc-8004.5035.1 at 4775.303 kb on + strand, within Xcc-8004.5035.1 at 4775.304 kb on - strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.369 kb on + strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.370 kb on - strand, within Xcc-8004.5035.1 at 4775.375 kb on + strand, within Xcc-8004.5035.1 at 4775.375 kb on + strand, within Xcc-8004.5035.1 at 4775.376 kb on - strand, within Xcc-8004.5035.1 at 4775.376 kb on - strand, within Xcc-8004.5035.1 at 4775.376 kb on - strand, within Xcc-8004.5035.1 at 4775.396 kb on + strand, within Xcc-8004.5035.1 at 4775.396 kb on + strand, within Xcc-8004.5035.1 at 4775.753 kb on + strand, within Xcc-8004.5035.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 4,772,954 + +1.1 4,772,954 + -2.5 4,772,954 + +1.0 4,772,954 + +0.3 4,772,954 + -0.3 4,772,954 + +1.1 4,772,955 - -1.3 4,772,955 - -0.2 4,772,955 - +0.6 4,772,978 + -0.2 4,772,978 + -1.4 4,772,979 - +1.5 4,772,979 - -0.1 4,772,979 - +0.1 4,772,979 - -0.9 4,772,979 - -2.7 4,772,979 - -0.5 4,772,996 + +1.2 4,772,996 + +0.0 4,772,996 + +3.3 4,772,996 + +0.1 4,772,997 - +0.1 4,772,997 - +1.4 4,772,997 - -0.3 4,772,997 - -0.3 4,773,077 + +0.8 4,773,077 + +0.8 4,773,077 + -0.2 4,773,077 + +1.0 4,773,077 + -0.1 4,773,077 + +0.3 4,773,077 + +1.4 4,773,077 + -0.5 4,773,077 + +0.0 4,773,077 + +1.1 4,773,077 + +0.5 4,773,077 + +0.4 4,773,077 + -0.1 4,773,077 + -1.9 4,773,077 + -0.3 4,773,077 + +0.9 4,773,077 + -0.5 4,773,078 - -2.0 4,773,078 - -0.4 4,773,078 - -0.8 4,773,078 - +0.5 4,773,078 - +1.7 4,773,078 - +1.0 4,773,078 - -0.5 4,773,078 - -0.9 4,773,078 - +1.1 4,773,078 - -0.1 4,773,078 - +2.0 4,773,078 - +0.0 4,773,078 - +0.6 4,773,078 - +1.2 4,773,078 - -0.5 4,773,078 - -0.1 4,773,078 - +0.7 4,773,257 - Xcc-8004.5033.1 0.25 -0.3 4,773,257 - Xcc-8004.5033.1 0.25 -0.9 4,773,430 + Xcc-8004.5033.1 0.46 -0.3 4,773,430 + Xcc-8004.5033.1 0.46 +0.5 4,773,430 + Xcc-8004.5033.1 0.46 +0.5 4,773,430 + Xcc-8004.5033.1 0.46 +0.3 4,773,430 + Xcc-8004.5033.1 0.46 +0.1 4,773,430 + Xcc-8004.5033.1 0.46 +1.6 4,773,430 + Xcc-8004.5033.1 0.46 +1.1 4,773,430 + Xcc-8004.5033.1 0.46 -1.0 4,773,431 - Xcc-8004.5033.1 0.46 +0.7 4,773,431 - Xcc-8004.5033.1 0.46 +0.7 4,773,431 - Xcc-8004.5033.1 0.46 +1.2 4,773,431 - Xcc-8004.5033.1 0.46 -0.3 4,773,730 + Xcc-8004.5033.1 0.81 -0.5 4,773,730 + Xcc-8004.5033.1 0.81 -2.1 4,773,731 - Xcc-8004.5033.1 0.82 +1.1 4,773,731 - Xcc-8004.5033.1 0.82 +0.3 4,773,731 - Xcc-8004.5033.1 0.82 +1.1 4,773,731 - Xcc-8004.5033.1 0.82 -1.2 4,773,753 - Xcc-8004.5033.1 0.84 -0.5 4,773,814 + +0.1 4,773,814 + -1.2 4,773,814 + +0.9 4,773,814 + -0.7 4,773,814 + -1.3 4,773,814 + -1.8 4,773,814 + -0.9 4,773,814 + +0.2 4,773,814 + +0.5 4,773,814 + +1.3 4,773,814 + -0.3 4,773,814 + -1.0 4,773,814 + +0.0 4,773,815 - +0.5 4,773,815 - +1.3 4,773,815 - -0.3 4,773,815 - -0.1 4,773,815 - +0.0 4,773,815 - +0.3 4,773,815 - -0.0 4,773,815 - -0.2 4,773,815 - +0.7 4,773,815 - +0.5 4,773,815 - -1.6 4,773,815 - -0.2 4,773,816 + -0.9 4,773,816 + -0.1 4,773,817 - -1.1 4,773,817 - -0.2 4,774,037 + Xcc-8004.5034.1 0.16 +0.2 4,774,037 + Xcc-8004.5034.1 0.16 -0.4 4,774,038 - Xcc-8004.5034.1 0.16 -0.4 4,774,112 + Xcc-8004.5034.1 0.23 +0.8 4,774,112 + Xcc-8004.5034.1 0.23 +0.1 4,774,113 - Xcc-8004.5034.1 0.23 -0.4 4,774,113 - Xcc-8004.5034.1 0.23 -0.6 4,774,220 + Xcc-8004.5034.1 0.34 +0.6 4,774,220 + Xcc-8004.5034.1 0.34 -0.5 4,774,220 + Xcc-8004.5034.1 0.34 -0.1 4,774,220 + Xcc-8004.5034.1 0.34 +0.5 4,774,220 + Xcc-8004.5034.1 0.34 +2.2 4,774,221 - Xcc-8004.5034.1 0.34 -0.7 4,774,221 - Xcc-8004.5034.1 0.34 +0.3 4,774,221 - Xcc-8004.5034.1 0.34 +1.0 4,774,221 - Xcc-8004.5034.1 0.34 -0.5 4,774,221 - Xcc-8004.5034.1 0.34 -1.6 4,774,221 - Xcc-8004.5034.1 0.34 -2.2 4,774,221 - Xcc-8004.5034.1 0.34 +0.7 4,774,247 + Xcc-8004.5034.1 0.37 -1.7 4,774,247 + Xcc-8004.5034.1 0.37 -0.2 4,774,247 + Xcc-8004.5034.1 0.37 -0.7 4,774,247 + Xcc-8004.5034.1 0.37 -0.8 4,774,247 + Xcc-8004.5034.1 0.37 -0.5 4,774,247 + Xcc-8004.5034.1 0.37 +0.5 4,774,247 + Xcc-8004.5034.1 0.37 -1.1 4,774,247 + Xcc-8004.5034.1 0.37 -0.6 4,774,247 + Xcc-8004.5034.1 0.37 -0.0 4,774,248 - Xcc-8004.5034.1 0.37 -0.5 4,774,248 - Xcc-8004.5034.1 0.37 -0.2 4,774,248 - Xcc-8004.5034.1 0.37 -1.3 4,774,248 - Xcc-8004.5034.1 0.37 +1.1 4,774,248 - Xcc-8004.5034.1 0.37 +0.1 4,774,248 - Xcc-8004.5034.1 0.37 +0.6 4,774,248 - Xcc-8004.5034.1 0.37 -0.1 4,774,248 - Xcc-8004.5034.1 0.37 +0.3 4,774,248 - Xcc-8004.5034.1 0.37 +0.5 4,774,430 + Xcc-8004.5034.1 0.55 -0.1 4,774,430 + Xcc-8004.5034.1 0.55 -0.1 4,774,431 - Xcc-8004.5034.1 0.55 +0.6 4,774,483 + Xcc-8004.5034.1 0.60 -1.5 4,774,661 + Xcc-8004.5034.1 0.78 -0.9 4,774,661 + Xcc-8004.5034.1 0.78 +0.3 4,774,662 - Xcc-8004.5034.1 0.78 +0.7 4,774,662 - Xcc-8004.5034.1 0.78 -0.4 4,774,662 - Xcc-8004.5034.1 0.78 -0.1 4,774,662 - Xcc-8004.5034.1 0.78 +0.6 4,774,662 - Xcc-8004.5034.1 0.78 +1.2 4,774,760 + Xcc-8004.5034.1 0.87 -0.7 4,774,760 + Xcc-8004.5034.1 0.87 -1.6 4,774,760 + Xcc-8004.5034.1 0.87 -0.9 4,774,761 - Xcc-8004.5034.1 0.87 -1.6 4,774,761 - Xcc-8004.5034.1 0.87 +0.8 4,774,761 - Xcc-8004.5034.1 0.87 -0.0 4,774,761 - Xcc-8004.5034.1 0.87 +0.1 4,774,761 - Xcc-8004.5034.1 0.87 -0.6 4,774,761 - Xcc-8004.5034.1 0.87 -1.5 4,774,761 - Xcc-8004.5034.1 0.87 -1.0 4,774,764 + Xcc-8004.5034.1 0.88 +0.4 4,774,764 + Xcc-8004.5034.1 0.88 +0.1 4,774,764 + Xcc-8004.5034.1 0.88 +0.0 4,774,764 + Xcc-8004.5034.1 0.88 +0.1 4,774,764 + Xcc-8004.5034.1 0.88 -0.1 4,774,765 - Xcc-8004.5034.1 0.88 -0.1 4,774,765 - Xcc-8004.5034.1 0.88 +0.1 4,774,765 - Xcc-8004.5034.1 0.88 -0.6 4,774,765 - Xcc-8004.5034.1 0.88 -0.3 4,774,765 - Xcc-8004.5034.1 0.88 +0.3 4,774,765 - Xcc-8004.5034.1 0.88 +0.7 4,774,765 - Xcc-8004.5034.1 0.88 +0.7 4,774,765 - Xcc-8004.5034.1 0.88 +2.2 4,774,765 - Xcc-8004.5034.1 0.88 -0.2 4,775,198 + Xcc-8004.5035.1 0.19 +0.5 4,775,198 + Xcc-8004.5035.1 0.19 +0.3 4,775,198 + Xcc-8004.5035.1 0.19 -0.0 4,775,198 + Xcc-8004.5035.1 0.19 +0.1 4,775,198 + Xcc-8004.5035.1 0.19 -0.1 4,775,198 + Xcc-8004.5035.1 0.19 +0.4 4,775,198 + Xcc-8004.5035.1 0.19 -0.2 4,775,198 + Xcc-8004.5035.1 0.19 +0.4 4,775,198 + Xcc-8004.5035.1 0.19 +0.7 4,775,199 - Xcc-8004.5035.1 0.19 -0.3 4,775,199 - Xcc-8004.5035.1 0.19 +0.2 4,775,199 - Xcc-8004.5035.1 0.19 -0.1 4,775,199 - Xcc-8004.5035.1 0.19 +0.2 4,775,199 - Xcc-8004.5035.1 0.19 -0.3 4,775,303 + Xcc-8004.5035.1 0.26 -0.2 4,775,304 - Xcc-8004.5035.1 0.26 -1.0 4,775,369 + Xcc-8004.5035.1 0.30 -0.1 4,775,369 + Xcc-8004.5035.1 0.30 +0.1 4,775,369 + Xcc-8004.5035.1 0.30 +0.0 4,775,369 + Xcc-8004.5035.1 0.30 +0.3 4,775,369 + Xcc-8004.5035.1 0.30 +0.3 4,775,369 + Xcc-8004.5035.1 0.30 -0.3 4,775,370 - Xcc-8004.5035.1 0.30 +0.0 4,775,370 - Xcc-8004.5035.1 0.30 -0.0 4,775,370 - Xcc-8004.5035.1 0.30 +1.9 4,775,370 - Xcc-8004.5035.1 0.30 -1.0 4,775,370 - Xcc-8004.5035.1 0.30 +0.3 4,775,370 - Xcc-8004.5035.1 0.30 -0.1 4,775,375 + Xcc-8004.5035.1 0.31 -0.9 4,775,375 + Xcc-8004.5035.1 0.31 -0.5 4,775,376 - Xcc-8004.5035.1 0.31 -1.5 4,775,376 - Xcc-8004.5035.1 0.31 +0.8 4,775,376 - Xcc-8004.5035.1 0.31 +0.2 4,775,396 + Xcc-8004.5035.1 0.32 +0.3 4,775,396 + Xcc-8004.5035.1 0.32 +1.1 4,775,753 + Xcc-8004.5035.1 0.55 +0.6
Or see this region's nucleotide sequence