Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5010.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5008.1 and Xcc-8004.5009.1 are separated by 72 nucleotidesXcc-8004.5009.1 and Xcc-8004.5010.1 are separated by 315 nucleotidesXcc-8004.5010.1 and Xcc-8004.5011.1 overlap by 6 nucleotidesXcc-8004.5011.1 and Xcc-8004.5012.1 are separated by 31 nucleotides Xcc-8004.5008.1: Xcc-8004.5008.1 - Two-component system regulatory protein, at 4,746,677 to 4,747,360 Xcc-8004.5008.1 Xcc-8004.5009.1: Xcc-8004.5009.1 - FIG01211818: hypothetical protein, at 4,747,433 to 4,747,810 Xcc-8004.5009.1 Xcc-8004.5010.1: Xcc-8004.5010.1 - tRNA dihydrouridine synthase A, at 4,748,126 to 4,749,226 Xcc-8004.5010.1 Xcc-8004.5011.1: Xcc-8004.5011.1 - hypothetical protein, at 4,749,221 to 4,749,538 Xcc-8004.5011.1 Xcc-8004.5012.1: Xcc-8004.5012.1 - FIG01211480: hypothetical protein, at 4,749,570 to 4,749,791 Xcc-8004.5012.1 Position (kb) 4748 4749 4750Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4747.372 kb on - strandat 4747.372 kb on - strandat 4747.372 kb on - strandat 4747.372 kb on - strandat 4747.372 kb on - strandat 4747.372 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.405 kb on - strandat 4747.405 kb on - strandat 4747.425 kb on - strandat 4747.425 kb on - strandat 4747.425 kb on - strandat 4747.425 kb on - strandat 4747.425 kb on - strandat 4747.425 kb on - strandat 4747.822 kb on - strandat 4747.940 kb on - strandat 4747.976 kb on + strandat 4747.976 kb on + strandat 4748.009 kb on + strandat 4748.009 kb on + strandat 4748.009 kb on + strandat 4748.009 kb on + strandat 4748.010 kb on - strandat 4748.010 kb on - strandat 4748.010 kb on - strandat 4748.056 kb on + strandat 4748.056 kb on + strandat 4748.056 kb on + strandat 4748.056 kb on + strandat 4748.056 kb on + strandat 4748.056 kb on + strandat 4748.057 kb on - strandat 4748.057 kb on - strandat 4748.057 kb on - strandat 4748.057 kb on - strandat 4748.116 kb on + strandat 4748.116 kb on + strandat 4748.116 kb on + strandat 4748.116 kb on + strandat 4748.117 kb on - strandat 4748.117 kb on - strandat 4748.137 kb on + strandat 4748.137 kb on + strandat 4748.137 kb on + strandat 4748.138 kb on - strandat 4748.325 kb on + strand, within Xcc-8004.5010.1at 4748.326 kb on - strand, within Xcc-8004.5010.1at 4748.326 kb on - strand, within Xcc-8004.5010.1at 4748.334 kb on + strand, within Xcc-8004.5010.1at 4748.334 kb on + strand, within Xcc-8004.5010.1at 4748.335 kb on - strand, within Xcc-8004.5010.1at 4748.335 kb on - strand, within Xcc-8004.5010.1at 4748.406 kb on + strand, within Xcc-8004.5010.1at 4748.406 kb on + strand, within Xcc-8004.5010.1at 4748.406 kb on + strand, within Xcc-8004.5010.1at 4748.406 kb on + strand, within Xcc-8004.5010.1at 4748.407 kb on - strand, within Xcc-8004.5010.1at 4748.419 kb on - strand, within Xcc-8004.5010.1at 4748.419 kb on - strand, within Xcc-8004.5010.1at 4748.550 kb on + strand, within Xcc-8004.5010.1at 4748.550 kb on + strand, within Xcc-8004.5010.1at 4748.551 kb on - strand, within Xcc-8004.5010.1at 4748.679 kb on + strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.680 kb on - strand, within Xcc-8004.5010.1at 4748.720 kb on - strand, within Xcc-8004.5010.1at 4748.856 kb on + strand, within Xcc-8004.5010.1at 4748.857 kb on - strand, within Xcc-8004.5010.1at 4749.009 kb on + strand, within Xcc-8004.5010.1at 4749.010 kb on - strand, within Xcc-8004.5010.1at 4749.108 kb on + strand, within Xcc-8004.5010.1at 4749.109 kb on - strand, within Xcc-8004.5010.1at 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.187 kb on + strandat 4749.188 kb on - strandat 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.279 kb on + strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.280 kb on - strand, within Xcc-8004.5011.1at 4749.293 kb on + strand, within Xcc-8004.5011.1at 4749.293 kb on + strand, within Xcc-8004.5011.1at 4749.317 kb on + strand, within Xcc-8004.5011.1at 4749.317 kb on + strand, within Xcc-8004.5011.1at 4749.318 kb on - strand, within Xcc-8004.5011.1at 4749.441 kb on + strand, within Xcc-8004.5011.1at 4749.442 kb on - strand, within Xcc-8004.5011.1at 4749.442 kb on - strand, within Xcc-8004.5011.1at 4749.442 kb on - strand, within Xcc-8004.5011.1at 4749.473 kb on + strand, within Xcc-8004.5011.1at 4749.473 kb on + strand, within Xcc-8004.5011.1at 4749.473 kb on + strand, within Xcc-8004.5011.1at 4749.474 kb on - strand, within Xcc-8004.5011.1at 4749.474 kb on - strand, within Xcc-8004.5011.1at 4749.474 kb on - strand, within Xcc-8004.5011.1at 4749.626 kb on - strand, within Xcc-8004.5012.1at 4749.626 kb on - strand, within Xcc-8004.5012.1at 4749.626 kb on - strand, within Xcc-8004.5012.1at 4749.667 kb on + strand, within Xcc-8004.5012.1at 4749.667 kb on + strand, within Xcc-8004.5012.1at 4749.668 kb on - strand, within Xcc-8004.5012.1at 4749.668 kb on - strand, within Xcc-8004.5012.1at 4749.668 kb on - strand, within Xcc-8004.5012.1at 4749.815 kb on + strandat 4749.905 kb on + strandat 4749.906 kb on - strandat 4749.906 kb on - strandat 4750.088 kb on + strandat 4750.088 kb on + strandat 4750.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,747,372 - +0.3
4,747,372 - +0.4
4,747,372 - +0.7
4,747,372 - +0.1
4,747,372 - -0.1
4,747,372 - +0.4
4,747,376 - -0.3
4,747,376 - -0.5
4,747,376 - +1.3
4,747,376 - -1.0
4,747,376 - +0.8
4,747,376 - -1.1
4,747,376 - -0.2
4,747,376 - -0.0
4,747,376 - +0.0
4,747,376 - +3.7
4,747,376 - -0.4
4,747,376 - -1.6
4,747,376 - +0.1
4,747,405 - -0.5
4,747,405 - +0.3
4,747,425 - -0.9
4,747,425 - +0.1
4,747,425 - -1.7
4,747,425 - -2.0
4,747,425 - -0.3
4,747,425 - -2.0
4,747,822 - +0.4
4,747,940 - -1.0
4,747,976 + -0.1
4,747,976 + +0.6
4,748,009 + -1.5
4,748,009 + -1.0
4,748,009 + +0.1
4,748,009 + +1.2
4,748,010 - +0.1
4,748,010 - +1.3
4,748,010 - -0.2
4,748,056 + -1.1
4,748,056 + +0.5
4,748,056 + +0.6
4,748,056 + -0.9
4,748,056 + +1.3
4,748,056 + -0.1
4,748,057 - -1.2
4,748,057 - +0.0
4,748,057 - +0.9
4,748,057 - +0.7
4,748,116 + +0.4
4,748,116 + -0.2
4,748,116 + -0.3
4,748,116 + -0.6
4,748,117 - -0.6
4,748,117 - +0.4
4,748,137 + -0.1
4,748,137 + +1.1
4,748,137 + +0.8
4,748,138 - -1.0
4,748,325 + Xcc-8004.5010.1 0.18 -0.7
4,748,326 - Xcc-8004.5010.1 0.18 +0.1
4,748,326 - Xcc-8004.5010.1 0.18 +0.7
4,748,334 + Xcc-8004.5010.1 0.19 +1.5
4,748,334 + Xcc-8004.5010.1 0.19 -1.1
4,748,335 - Xcc-8004.5010.1 0.19 -0.2
4,748,335 - Xcc-8004.5010.1 0.19 +1.1
4,748,406 + Xcc-8004.5010.1 0.25 +0.6
4,748,406 + Xcc-8004.5010.1 0.25 +0.4
4,748,406 + Xcc-8004.5010.1 0.25 -1.9
4,748,406 + Xcc-8004.5010.1 0.25 +1.0
4,748,407 - Xcc-8004.5010.1 0.26 +1.3
4,748,419 - Xcc-8004.5010.1 0.27 +0.1
4,748,419 - Xcc-8004.5010.1 0.27 +0.6
4,748,550 + Xcc-8004.5010.1 0.39 -0.2
4,748,550 + Xcc-8004.5010.1 0.39 +0.7
4,748,551 - Xcc-8004.5010.1 0.39 +0.4
4,748,679 + Xcc-8004.5010.1 0.50 +0.7
4,748,680 - Xcc-8004.5010.1 0.50 -1.3
4,748,680 - Xcc-8004.5010.1 0.50 -0.4
4,748,680 - Xcc-8004.5010.1 0.50 +1.0
4,748,680 - Xcc-8004.5010.1 0.50 -0.1
4,748,680 - Xcc-8004.5010.1 0.50 -0.0
4,748,680 - Xcc-8004.5010.1 0.50 +2.4
4,748,680 - Xcc-8004.5010.1 0.50 +0.3
4,748,720 - Xcc-8004.5010.1 0.54 +1.4
4,748,856 + Xcc-8004.5010.1 0.66 +0.2
4,748,857 - Xcc-8004.5010.1 0.66 -0.3
4,749,009 + Xcc-8004.5010.1 0.80 -1.1
4,749,010 - Xcc-8004.5010.1 0.80 +0.1
4,749,108 + Xcc-8004.5010.1 0.89 -0.0
4,749,109 - Xcc-8004.5010.1 0.89 -0.6
4,749,187 + +0.7
4,749,187 + -1.2
4,749,187 + -0.7
4,749,187 + -1.9
4,749,187 + -0.7
4,749,188 - -0.4
4,749,279 + Xcc-8004.5011.1 0.18 -0.1
4,749,279 + Xcc-8004.5011.1 0.18 -1.1
4,749,279 + Xcc-8004.5011.1 0.18 -0.3
4,749,279 + Xcc-8004.5011.1 0.18 +0.3
4,749,280 - Xcc-8004.5011.1 0.19 -0.0
4,749,280 - Xcc-8004.5011.1 0.19 -0.4
4,749,280 - Xcc-8004.5011.1 0.19 +1.2
4,749,280 - Xcc-8004.5011.1 0.19 +0.3
4,749,280 - Xcc-8004.5011.1 0.19 -0.9
4,749,280 - Xcc-8004.5011.1 0.19 -0.8
4,749,293 + Xcc-8004.5011.1 0.23 +0.3
4,749,293 + Xcc-8004.5011.1 0.23 +1.2
4,749,317 + Xcc-8004.5011.1 0.30 -0.6
4,749,317 + Xcc-8004.5011.1 0.30 +0.2
4,749,318 - Xcc-8004.5011.1 0.31 -0.0
4,749,441 + Xcc-8004.5011.1 0.69 +0.3
4,749,442 - Xcc-8004.5011.1 0.69 +0.4
4,749,442 - Xcc-8004.5011.1 0.69 -1.9
4,749,442 - Xcc-8004.5011.1 0.69 +0.3
4,749,473 + Xcc-8004.5011.1 0.79 +1.2
4,749,473 + Xcc-8004.5011.1 0.79 +0.2
4,749,473 + Xcc-8004.5011.1 0.79 +0.6
4,749,474 - Xcc-8004.5011.1 0.80 -0.2
4,749,474 - Xcc-8004.5011.1 0.80 +0.5
4,749,474 - Xcc-8004.5011.1 0.80 -1.0
4,749,626 - Xcc-8004.5012.1 0.25 -1.1
4,749,626 - Xcc-8004.5012.1 0.25 -0.5
4,749,626 - Xcc-8004.5012.1 0.25 -1.0
4,749,667 + Xcc-8004.5012.1 0.44 -0.4
4,749,667 + Xcc-8004.5012.1 0.44 +0.6
4,749,668 - Xcc-8004.5012.1 0.44 +0.7
4,749,668 - Xcc-8004.5012.1 0.44 +2.2
4,749,668 - Xcc-8004.5012.1 0.44 +0.0
4,749,815 + -0.6
4,749,905 + -1.6
4,749,906 - -1.0
4,749,906 - +0.9
4,750,088 + +0.7
4,750,088 + -0.8
4,750,089 - -0.3

Or see this region's nucleotide sequence