Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4986.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,731,726	+		Xcc-8004.4985.1	0.34	-0.9
4,731,726	+		Xcc-8004.4985.1	0.34	-0.9
4,731,726	+		Xcc-8004.4985.1	0.34	+0.7
4,731,727	-		Xcc-8004.4985.1	0.34	-0.8
4,731,727	-		Xcc-8004.4985.1	0.34	+1.0
4,731,727	-		Xcc-8004.4985.1	0.34	-0.3
4,731,727	-		Xcc-8004.4985.1	0.34	-0.6
4,731,727	-		Xcc-8004.4985.1	0.34	+0.2
4,731,727	-		Xcc-8004.4985.1	0.34	-0.1
4,731,738	+		Xcc-8004.4985.1	0.35	+1.1
4,731,738	+		Xcc-8004.4985.1	0.35	+0.4
4,731,739	-		Xcc-8004.4985.1	0.36	-1.3
4,731,739	-		Xcc-8004.4985.1	0.36	-0.8
4,731,739	-		Xcc-8004.4985.1	0.36	-0.7
4,731,920	+		Xcc-8004.4985.1	0.55	-0.5
4,731,920	+		Xcc-8004.4985.1	0.55	-0.2
4,731,921	-		Xcc-8004.4985.1	0.55	+0.0
4,731,931	+		Xcc-8004.4985.1	0.56	+0.9
4,731,932	-		Xcc-8004.4985.1	0.56	-0.5
4,731,932	-		Xcc-8004.4985.1	0.56	-1.8
4,731,932	-		Xcc-8004.4985.1	0.56	-0.1
4,731,932	-		Xcc-8004.4985.1	0.56	+0.4
4,731,994	-		Xcc-8004.4985.1	0.63	-0.9
4,731,994	-		Xcc-8004.4985.1	0.63	-0.7
4,731,994	-		Xcc-8004.4985.1	0.63	-0.1
4,731,994	-		Xcc-8004.4985.1	0.63	+0.2
4,732,080	+		Xcc-8004.4985.1	0.73	-0.1
4,732,080	+		Xcc-8004.4985.1	0.73	+0.1
4,732,080	+		Xcc-8004.4985.1	0.73	+0.1
4,732,080	+		Xcc-8004.4985.1	0.73	-0.6
4,732,080	+		Xcc-8004.4985.1	0.73	+0.1
4,732,080	+		Xcc-8004.4985.1	0.73	+0.8
4,732,081	-		Xcc-8004.4985.1	0.73	-0.3
4,732,081	-		Xcc-8004.4985.1	0.73	-0.1
4,732,081	-		Xcc-8004.4985.1	0.73	-0.8
4,732,081	-		Xcc-8004.4985.1	0.73	+0.2
4,732,081	-		Xcc-8004.4985.1	0.73	+0.6
4,732,081	-		Xcc-8004.4985.1	0.73	-0.2
4,732,081	-		Xcc-8004.4985.1	0.73	-0.7
4,732,320	+				+0.1
4,732,320	+				-0.0
4,732,320	+				+0.7
4,732,320	+				+0.1
4,732,320	+				+0.5
4,732,320	+				+0.2
4,732,320	+				+0.7
4,732,321	-				+0.2
4,732,321	-				-0.9
4,732,321	-				-0.6
4,732,321	-				+0.5
4,732,321	-				+1.2
4,732,321	-				-0.3
4,732,367	+				+0.2
4,732,368	-				+0.7
4,732,368	-				+1.2
4,732,368	-				-0.7
4,732,387	+				+0.1
4,732,387	+				+0.1
4,732,388	-				-0.6
4,732,388	-				-1.0
4,732,462	+				-0.9
4,732,462	+				+0.5
4,732,462	+				-0.5
4,732,462	+				-0.8
4,732,462	+				+0.1
4,732,462	+				+0.4
4,732,462	+				+0.1
4,732,462	+				+1.2
4,732,462	+				+1.9
4,732,463	-				-0.9
4,732,463	-				-0.3
4,732,463	-				-0.6
4,732,463	-				+0.5
4,732,463	-				+0.1
4,732,463	-				-0.8
4,732,463	-				-0.1
4,732,463	-				-0.6
4,732,463	-				+0.5
4,732,463	-				+0.8
4,732,463	-				-0.9
4,732,463	-				-1.2
4,732,530	+				-0.4
4,732,530	+				+0.1
4,732,530	+				+0.2
4,732,531	-				+0.0
4,732,531	-				-1.5
4,732,531	-				-0.2
4,732,531	-				-0.9
4,732,531	-				+1.0
4,732,531	-				-0.3
4,732,563	+				+0.3
4,732,563	+				+0.9
4,732,563	+				-0.4
4,732,563	+				-0.9
4,732,563	+				+0.5
4,732,563	+				+0.3
4,732,563	+				+0.3
4,732,564	-				-0.7
4,732,564	-				-0.9
4,732,564	-				+1.2
4,732,564	-				+0.3
4,732,564	-				+0.1
4,732,564	-				-1.4
4,732,574	+				-1.2
4,732,574	+				-0.2
4,732,575	-				-0.7
4,732,575	-				-0.8
4,732,575	-				-0.1
4,732,575	-				+1.0
4,732,609	+				+1.2
4,732,609	+				+0.1
4,732,609	+				+1.4
4,732,610	-				-0.2
4,732,716	+		Xcc-8004.4986.1	0.15	-0.1
4,732,716	+		Xcc-8004.4986.1	0.15	+1.1
4,732,926	+		Xcc-8004.4986.1	0.60	-1.7
4,732,926	+		Xcc-8004.4986.1	0.60	-1.8
4,732,927	-		Xcc-8004.4986.1	0.61	-0.3
4,732,927	-		Xcc-8004.4986.1	0.61	-0.3
4,733,180	-				-0.4
4,733,180	-				+1.3
4,733,336	+		Xcc-8004.4987.1	0.40	-1.0
4,733,337	-		Xcc-8004.4987.1	0.41	-0.4
4,733,337	-		Xcc-8004.4987.1	0.41	+0.4
4,733,337	-		Xcc-8004.4987.1	0.41	-1.5
4,733,337	-		Xcc-8004.4987.1	0.41	+0.3
4,733,337	-		Xcc-8004.4987.1	0.41	+0.4
4,733,337	-		Xcc-8004.4987.1	0.41	+0.4
4,733,419	+		Xcc-8004.4987.1	0.63	+0.3
4,733,420	-		Xcc-8004.4987.1	0.64	-2.6
4,733,420	-		Xcc-8004.4987.1	0.64	-0.7
4,733,464	+		Xcc-8004.4987.1	0.76	+0.2
4,733,464	+		Xcc-8004.4987.1	0.76	+0.7
4,733,464	+		Xcc-8004.4987.1	0.76	+1.2
4,733,464	+		Xcc-8004.4987.1	0.76	-0.7
4,733,464	+		Xcc-8004.4987.1	0.76	-0.3
4,733,465	-		Xcc-8004.4987.1	0.76	+0.1
4,733,465	-		Xcc-8004.4987.1	0.76	+1.2
4,733,465	-		Xcc-8004.4987.1	0.76	+0.3
4,733,465	-		Xcc-8004.4987.1	0.76	+0.9
4,733,465	-		Xcc-8004.4987.1	0.76	+0.6
4,733,563	+				-2.5
4,733,564	-				-0.9
4,733,590	+				-0.7
4,733,590	+				+0.1
4,733,590	+				-0.1
4,733,590	+				+0.8
4,733,590	+				+0.3
4,733,590	+				+1.4
4,733,591	-				-1.3
4,733,948	+		Xcc-8004.4988.1	0.32	-0.5
4,733,948	+		Xcc-8004.4988.1	0.32	-1.1
4,733,948	+		Xcc-8004.4988.1	0.32	+0.3
4,733,948	+		Xcc-8004.4988.1	0.32	-0.9
4,733,948	+		Xcc-8004.4988.1	0.32	+0.8
4,733,948	+		Xcc-8004.4988.1	0.32	-0.5
4,733,948	+		Xcc-8004.4988.1	0.32	+0.3
4,733,948	+		Xcc-8004.4988.1	0.32	-0.7
4,733,948	+		Xcc-8004.4988.1	0.32	-2.1
4,733,949	-		Xcc-8004.4988.1	0.32	+0.2
4,733,949	-		Xcc-8004.4988.1	0.32	+0.3
4,733,949	-		Xcc-8004.4988.1	0.32	-0.5
4,733,949	-		Xcc-8004.4988.1	0.32	+1.0
4,733,949	-		Xcc-8004.4988.1	0.32	+0.3
4,733,949	-		Xcc-8004.4988.1	0.32	+1.5
4,733,949	-		Xcc-8004.4988.1	0.32	+0.4
4,733,949	-		Xcc-8004.4988.1	0.32	+0.7