Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4948.1 and Xcc-8004.4949.1 are separated by 115 nucleotides Xcc-8004.4949.1 and Xcc-8004.4950.1 are separated by 3 nucleotides Xcc-8004.4950.1 and Xcc-8004.4951.1 overlap by 4 nucleotides Xcc-8004.4951.1 and Xcc-8004.4952.1 are separated by 90 nucleotides
Xcc-8004.4948.1: Xcc-8004.4948.1 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 4,701,660 to 4,703,096
Xcc-8004.4948.1
Xcc-8004.4949.1: Xcc-8004.4949.1 - FIG01210443: hypothetical protein, at 4,703,212 to 4,703,574
Xcc-8004.4949.1
Xcc-8004.4950.1: Xcc-8004.4950.1 - FIG01211151: hypothetical protein, at 4,703,578 to 4,704,081
Xcc-8004.4950.1
Xcc-8004.4951.1: Xcc-8004.4951.1 - FIG01210986: hypothetical protein, at 4,704,078 to 4,704,557
Xcc-8004.4951.1
Xcc-8004.4952.1: Xcc-8004.4952.1 - transport protein, at 4,704,648 to 4,705,754
Xcc-8004.4952.1
Position (kb) 4704
4705 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4703.125 kb on + strand at 4703.125 kb on + strand at 4703.135 kb on + strand at 4703.136 kb on - strand at 4703.151 kb on + strand at 4703.151 kb on + strand at 4703.151 kb on + strand at 4703.151 kb on + strand at 4703.151 kb on + strand at 4703.151 kb on + strand at 4703.151 kb on + strand at 4703.152 kb on - strand at 4703.152 kb on - strand at 4703.152 kb on - strand at 4703.152 kb on - strand at 4703.157 kb on + strand at 4703.199 kb on + strand at 4703.199 kb on + strand at 4703.199 kb on + strand at 4703.199 kb on + strand at 4703.199 kb on + strand at 4703.199 kb on + strand at 4703.200 kb on - strand at 4703.200 kb on - strand at 4703.200 kb on - strand at 4703.200 kb on - strand at 4703.200 kb on - strand at 4703.206 kb on + strand at 4703.207 kb on - strand at 4703.560 kb on - strand at 4703.572 kb on + strand at 4703.572 kb on + strand at 4703.572 kb on + strand at 4703.572 kb on + strand at 4703.572 kb on + strand at 4703.572 kb on + strand at 4703.572 kb on + strand at 4703.572 kb on + strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.573 kb on - strand at 4703.595 kb on + strand at 4703.595 kb on + strand at 4703.595 kb on + strand at 4703.596 kb on - strand at 4703.596 kb on - strand at 4703.596 kb on - strand at 4703.596 kb on - strand at 4703.596 kb on - strand at 4703.658 kb on - strand, within Xcc-8004.4950.1 at 4703.658 kb on - strand, within Xcc-8004.4950.1 at 4703.658 kb on - strand, within Xcc-8004.4950.1 at 4703.658 kb on - strand, within Xcc-8004.4950.1 at 4703.947 kb on + strand, within Xcc-8004.4950.1 at 4703.947 kb on + strand, within Xcc-8004.4950.1 at 4703.948 kb on - strand, within Xcc-8004.4950.1 at 4703.948 kb on - strand, within Xcc-8004.4950.1 at 4703.948 kb on - strand, within Xcc-8004.4950.1 at 4703.948 kb on - strand, within Xcc-8004.4950.1 at 4703.948 kb on - strand, within Xcc-8004.4950.1 at 4704.502 kb on - strand, within Xcc-8004.4951.1 at 4704.502 kb on - strand, within Xcc-8004.4951.1 at 4704.502 kb on - strand, within Xcc-8004.4951.1 at 4704.603 kb on + strand at 4704.603 kb on + strand at 4704.604 kb on - strand at 4704.604 kb on - strand at 4704.604 kb on - strand at 4704.604 kb on - strand at 4704.604 kb on - strand at 4704.604 kb on - strand at 4704.768 kb on + strand, within Xcc-8004.4952.1 at 4704.768 kb on + strand, within Xcc-8004.4952.1 at 4704.769 kb on - strand, within Xcc-8004.4952.1 at 4704.769 kb on - strand, within Xcc-8004.4952.1 at 4704.867 kb on + strand, within Xcc-8004.4952.1 at 4704.867 kb on + strand, within Xcc-8004.4952.1 at 4704.867 kb on + strand, within Xcc-8004.4952.1 at 4704.867 kb on + strand, within Xcc-8004.4952.1 at 4704.867 kb on + strand, within Xcc-8004.4952.1 at 4704.867 kb on + strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4704.868 kb on - strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.206 kb on + strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.207 kb on - strand, within Xcc-8004.4952.1 at 4705.311 kb on + strand, within Xcc-8004.4952.1 at 4705.311 kb on + strand, within Xcc-8004.4952.1 at 4705.312 kb on - strand, within Xcc-8004.4952.1 at 4705.312 kb on - strand, within Xcc-8004.4952.1 at 4705.337 kb on + strand, within Xcc-8004.4952.1 at 4705.337 kb on + strand, within Xcc-8004.4952.1 at 4705.338 kb on - strand, within Xcc-8004.4952.1 at 4705.338 kb on - strand, within Xcc-8004.4952.1 at 4705.355 kb on - strand, within Xcc-8004.4952.1 at 4705.375 kb on + strand, within Xcc-8004.4952.1 at 4705.376 kb on - strand, within Xcc-8004.4952.1 at 4705.376 kb on - strand, within Xcc-8004.4952.1 at 4705.443 kb on + strand, within Xcc-8004.4952.1 at 4705.443 kb on + strand, within Xcc-8004.4952.1 at 4705.443 kb on + strand, within Xcc-8004.4952.1 at 4705.444 kb on - strand, within Xcc-8004.4952.1 at 4705.536 kb on + strand, within Xcc-8004.4952.1 at 4705.536 kb on + strand, within Xcc-8004.4952.1 at 4705.537 kb on - strand, within Xcc-8004.4952.1 at 4705.540 kb on + strand, within Xcc-8004.4952.1 at 4705.540 kb on + strand, within Xcc-8004.4952.1 at 4705.541 kb on - strand, within Xcc-8004.4952.1 at 4705.541 kb on - strand, within Xcc-8004.4952.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 4,703,125 + -1.8 4,703,125 + -0.5 4,703,135 + -1.3 4,703,136 - -0.1 4,703,151 + -0.1 4,703,151 + -0.2 4,703,151 + +1.3 4,703,151 + -0.9 4,703,151 + +0.3 4,703,151 + +0.2 4,703,151 + +0.0 4,703,152 - -0.0 4,703,152 - +0.2 4,703,152 - -0.6 4,703,152 - +1.1 4,703,157 + +0.0 4,703,199 + +0.0 4,703,199 + -0.4 4,703,199 + -0.4 4,703,199 + -1.7 4,703,199 + +0.4 4,703,199 + -0.4 4,703,200 - -0.4 4,703,200 - +0.1 4,703,200 - +0.3 4,703,200 - +0.2 4,703,200 - -0.1 4,703,206 + +0.3 4,703,207 - -0.2 4,703,560 - -1.5 4,703,572 + -0.5 4,703,572 + +0.5 4,703,572 + -0.2 4,703,572 + -0.3 4,703,572 + +0.1 4,703,572 + -0.3 4,703,572 + -0.9 4,703,572 + +0.2 4,703,573 - -0.1 4,703,573 - -0.8 4,703,573 - -0.2 4,703,573 - -1.0 4,703,573 - -0.6 4,703,573 - +0.3 4,703,573 - -0.9 4,703,573 - -0.2 4,703,573 - -0.5 4,703,595 + +0.1 4,703,595 + -0.3 4,703,595 + -0.2 4,703,596 - +0.4 4,703,596 - -0.3 4,703,596 - -0.5 4,703,596 - +2.0 4,703,596 - -0.1 4,703,658 - Xcc-8004.4950.1 0.16 -0.9 4,703,658 - Xcc-8004.4950.1 0.16 -0.2 4,703,658 - Xcc-8004.4950.1 0.16 -0.9 4,703,658 - Xcc-8004.4950.1 0.16 +0.3 4,703,947 + Xcc-8004.4950.1 0.73 +0.9 4,703,947 + Xcc-8004.4950.1 0.73 -0.6 4,703,948 - Xcc-8004.4950.1 0.73 -0.6 4,703,948 - Xcc-8004.4950.1 0.73 +0.4 4,703,948 - Xcc-8004.4950.1 0.73 -0.3 4,703,948 - Xcc-8004.4950.1 0.73 +0.5 4,703,948 - Xcc-8004.4950.1 0.73 -0.5 4,704,502 - Xcc-8004.4951.1 0.88 +0.5 4,704,502 - Xcc-8004.4951.1 0.88 -0.0 4,704,502 - Xcc-8004.4951.1 0.88 +1.5 4,704,603 + -0.3 4,704,603 + +1.0 4,704,604 - +0.7 4,704,604 - -0.1 4,704,604 - -0.6 4,704,604 - +0.6 4,704,604 - -0.6 4,704,604 - +1.2 4,704,768 + Xcc-8004.4952.1 0.11 -2.5 4,704,768 + Xcc-8004.4952.1 0.11 +0.5 4,704,769 - Xcc-8004.4952.1 0.11 +0.2 4,704,769 - Xcc-8004.4952.1 0.11 +0.4 4,704,867 + Xcc-8004.4952.1 0.20 -1.9 4,704,867 + Xcc-8004.4952.1 0.20 +0.8 4,704,867 + Xcc-8004.4952.1 0.20 -2.3 4,704,867 + Xcc-8004.4952.1 0.20 -0.3 4,704,867 + Xcc-8004.4952.1 0.20 +1.1 4,704,867 + Xcc-8004.4952.1 0.20 -0.2 4,704,868 - Xcc-8004.4952.1 0.20 +1.6 4,704,868 - Xcc-8004.4952.1 0.20 -0.8 4,704,868 - Xcc-8004.4952.1 0.20 -0.2 4,704,868 - Xcc-8004.4952.1 0.20 +0.1 4,704,868 - Xcc-8004.4952.1 0.20 -0.8 4,704,868 - Xcc-8004.4952.1 0.20 -0.5 4,704,868 - Xcc-8004.4952.1 0.20 +0.1 4,704,868 - Xcc-8004.4952.1 0.20 +0.6 4,704,868 - Xcc-8004.4952.1 0.20 -0.9 4,704,868 - Xcc-8004.4952.1 0.20 -0.2 4,704,868 - Xcc-8004.4952.1 0.20 +0.1 4,704,868 - Xcc-8004.4952.1 0.20 -0.3 4,704,868 - Xcc-8004.4952.1 0.20 -1.3 4,704,868 - Xcc-8004.4952.1 0.20 -0.4 4,705,206 + Xcc-8004.4952.1 0.50 +1.4 4,705,206 + Xcc-8004.4952.1 0.50 +0.3 4,705,206 + Xcc-8004.4952.1 0.50 +0.1 4,705,206 + Xcc-8004.4952.1 0.50 -0.8 4,705,206 + Xcc-8004.4952.1 0.50 -0.6 4,705,207 - Xcc-8004.4952.1 0.50 -1.8 4,705,207 - Xcc-8004.4952.1 0.50 +0.2 4,705,207 - Xcc-8004.4952.1 0.50 -0.0 4,705,207 - Xcc-8004.4952.1 0.50 -0.6 4,705,207 - Xcc-8004.4952.1 0.50 -1.8 4,705,207 - Xcc-8004.4952.1 0.50 +1.3 4,705,207 - Xcc-8004.4952.1 0.50 +0.3 4,705,311 + Xcc-8004.4952.1 0.60 -0.5 4,705,311 + Xcc-8004.4952.1 0.60 -1.8 4,705,312 - Xcc-8004.4952.1 0.60 -0.1 4,705,312 - Xcc-8004.4952.1 0.60 -0.7 4,705,337 + Xcc-8004.4952.1 0.62 -0.9 4,705,337 + Xcc-8004.4952.1 0.62 -0.3 4,705,338 - Xcc-8004.4952.1 0.62 -0.5 4,705,338 - Xcc-8004.4952.1 0.62 +1.0 4,705,355 - Xcc-8004.4952.1 0.64 -0.0 4,705,375 + Xcc-8004.4952.1 0.66 -0.7 4,705,376 - Xcc-8004.4952.1 0.66 -0.0 4,705,376 - Xcc-8004.4952.1 0.66 +0.6 4,705,443 + Xcc-8004.4952.1 0.72 +0.5 4,705,443 + Xcc-8004.4952.1 0.72 -2.1 4,705,443 + Xcc-8004.4952.1 0.72 -0.9 4,705,444 - Xcc-8004.4952.1 0.72 +0.2 4,705,536 + Xcc-8004.4952.1 0.80 -1.6 4,705,536 + Xcc-8004.4952.1 0.80 -1.5 4,705,537 - Xcc-8004.4952.1 0.80 -0.1 4,705,540 + Xcc-8004.4952.1 0.81 +0.3 4,705,540 + Xcc-8004.4952.1 0.81 +0.1 4,705,541 - Xcc-8004.4952.1 0.81 -0.1 4,705,541 - Xcc-8004.4952.1 0.81 +1.3
Or see this region's nucleotide sequence