Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4922.1 and Xcc-8004.4923.1 are separated by 114 nucleotides Xcc-8004.4923.1 and Xcc-8004.4924.1 are separated by 375 nucleotides
Xcc-8004.4922.1: Xcc-8004.4922.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 4,682,623 to 4,683,678
Xcc-8004.4922.1
Xcc-8004.4923.1: Xcc-8004.4923.1 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 4,683,793 to 4,684,440
Xcc-8004.4923.1
Xcc-8004.4924.1: Xcc-8004.4924.1 - Uracil-DNA glycosylase, putative family 6, at 4,684,816 to 4,685,475
Xcc-8004.4924.1
Position (kb) 4683
4684
4685 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4682.845 kb on - strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.167 kb on + strand, within Xcc-8004.4922.1 at 4683.168 kb on - strand, within Xcc-8004.4922.1 at 4683.168 kb on - strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.350 kb on + strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.351 kb on - strand, within Xcc-8004.4922.1 at 4683.425 kb on + strand, within Xcc-8004.4922.1 at 4683.425 kb on + strand, within Xcc-8004.4922.1 at 4683.426 kb on - strand, within Xcc-8004.4922.1 at 4683.426 kb on - strand, within Xcc-8004.4922.1 at 4683.426 kb on - strand, within Xcc-8004.4922.1 at 4683.709 kb on + strand at 4683.709 kb on + strand at 4683.709 kb on + strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.710 kb on - strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.711 kb on + strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.712 kb on - strand at 4683.733 kb on + strand at 4683.734 kb on - strand at 4683.734 kb on - strand at 4683.734 kb on - strand at 4683.734 kb on - strand at 4683.735 kb on + strand at 4683.735 kb on + strand at 4683.735 kb on + strand at 4683.735 kb on + strand at 4683.736 kb on - strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.743 kb on + strand at 4683.744 kb on + strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.744 kb on - strand at 4683.746 kb on - strand at 4683.761 kb on + strand at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.964 kb on + strand, within Xcc-8004.4923.1 at 4683.965 kb on - strand, within Xcc-8004.4923.1 at 4683.965 kb on - strand, within Xcc-8004.4923.1 at 4683.965 kb on - strand, within Xcc-8004.4923.1 at 4684.538 kb on + strand at 4684.538 kb on + strand at 4684.539 kb on - strand at 4684.539 kb on - strand at 4684.539 kb on - strand at 4684.539 kb on - strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.546 kb on + strand at 4684.547 kb on - strand at 4684.547 kb on - strand at 4684.547 kb on - strand at 4684.563 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.742 kb on + strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.743 kb on - strand at 4684.783 kb on - strand at 4684.961 kb on + strand, within Xcc-8004.4924.1 at 4684.961 kb on + strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4684.962 kb on - strand, within Xcc-8004.4924.1 at 4685.113 kb on + strand, within Xcc-8004.4924.1 at 4685.113 kb on + strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1 at 4685.114 kb on - strand, within Xcc-8004.4924.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 4,682,845 - Xcc-8004.4922.1 0.21 -0.3 4,683,167 + Xcc-8004.4922.1 0.52 +0.3 4,683,167 + Xcc-8004.4922.1 0.52 +0.3 4,683,167 + Xcc-8004.4922.1 0.52 -0.5 4,683,167 + Xcc-8004.4922.1 0.52 -1.8 4,683,167 + Xcc-8004.4922.1 0.52 -0.4 4,683,167 + Xcc-8004.4922.1 0.52 +0.2 4,683,168 - Xcc-8004.4922.1 0.52 -0.6 4,683,168 - Xcc-8004.4922.1 0.52 +0.1 4,683,350 + Xcc-8004.4922.1 0.69 -0.6 4,683,350 + Xcc-8004.4922.1 0.69 -0.7 4,683,350 + Xcc-8004.4922.1 0.69 -0.9 4,683,350 + Xcc-8004.4922.1 0.69 -1.0 4,683,350 + Xcc-8004.4922.1 0.69 +1.1 4,683,350 + Xcc-8004.4922.1 0.69 -1.3 4,683,351 - Xcc-8004.4922.1 0.69 +0.2 4,683,351 - Xcc-8004.4922.1 0.69 -1.3 4,683,351 - Xcc-8004.4922.1 0.69 +0.7 4,683,351 - Xcc-8004.4922.1 0.69 +1.3 4,683,351 - Xcc-8004.4922.1 0.69 -0.6 4,683,351 - Xcc-8004.4922.1 0.69 -0.5 4,683,351 - Xcc-8004.4922.1 0.69 -0.9 4,683,425 + Xcc-8004.4922.1 0.76 -0.1 4,683,425 + Xcc-8004.4922.1 0.76 +0.8 4,683,426 - Xcc-8004.4922.1 0.76 -1.5 4,683,426 - Xcc-8004.4922.1 0.76 +0.2 4,683,426 - Xcc-8004.4922.1 0.76 +0.0 4,683,709 + -0.6 4,683,709 + -1.0 4,683,709 + +0.3 4,683,710 - +0.3 4,683,710 - -0.3 4,683,710 - -0.5 4,683,710 - -0.6 4,683,710 - -1.4 4,683,711 + -0.5 4,683,711 + -2.2 4,683,711 + +0.3 4,683,711 + +0.1 4,683,711 + +1.1 4,683,711 + +0.1 4,683,711 + -1.1 4,683,711 + -0.4 4,683,711 + +0.0 4,683,711 + -0.0 4,683,711 + -0.9 4,683,712 - +0.1 4,683,712 - -0.2 4,683,712 - +1.8 4,683,712 - -2.4 4,683,712 - -0.1 4,683,712 - -0.4 4,683,733 + +1.2 4,683,734 - +0.1 4,683,734 - +0.6 4,683,734 - +0.0 4,683,734 - -0.3 4,683,735 + -0.9 4,683,735 + +0.1 4,683,735 + +3.3 4,683,735 + -0.3 4,683,736 - +1.1 4,683,743 + -0.3 4,683,743 + -0.6 4,683,743 + +1.0 4,683,743 + +0.6 4,683,743 + +0.3 4,683,743 + +0.1 4,683,743 + +0.3 4,683,744 + -0.1 4,683,744 - +0.1 4,683,744 - -0.5 4,683,744 - +0.1 4,683,744 - -0.5 4,683,744 - -0.9 4,683,744 - +1.0 4,683,746 - -0.6 4,683,761 + +0.4 4,683,964 + Xcc-8004.4923.1 0.26 -1.0 4,683,964 + Xcc-8004.4923.1 0.26 +1.3 4,683,964 + Xcc-8004.4923.1 0.26 +0.6 4,683,964 + Xcc-8004.4923.1 0.26 -0.4 4,683,965 - Xcc-8004.4923.1 0.27 -0.8 4,683,965 - Xcc-8004.4923.1 0.27 -0.7 4,683,965 - Xcc-8004.4923.1 0.27 +0.4 4,684,538 + +0.2 4,684,538 + -0.2 4,684,539 - +2.3 4,684,539 - -1.5 4,684,539 - -0.1 4,684,539 - +0.5 4,684,546 + +0.4 4,684,546 + -1.0 4,684,546 + -0.7 4,684,546 + +0.0 4,684,546 + +0.1 4,684,547 - -0.5 4,684,547 - -0.2 4,684,547 - +1.2 4,684,563 + -0.4 4,684,742 + -0.4 4,684,742 + +1.0 4,684,742 + +0.5 4,684,742 + +0.4 4,684,742 + +0.2 4,684,742 + -0.2 4,684,742 + -0.6 4,684,742 + +0.4 4,684,742 + +1.3 4,684,742 + +0.2 4,684,742 + -0.2 4,684,742 + -1.2 4,684,743 - -1.2 4,684,743 - +0.7 4,684,743 - +0.6 4,684,743 - +1.4 4,684,743 - -0.6 4,684,743 - -0.4 4,684,743 - -1.4 4,684,743 - +0.1 4,684,743 - -0.0 4,684,743 - +0.3 4,684,783 - -0.8 4,684,961 + Xcc-8004.4924.1 0.22 +0.5 4,684,961 + Xcc-8004.4924.1 0.22 +0.2 4,684,962 - Xcc-8004.4924.1 0.22 +0.1 4,684,962 - Xcc-8004.4924.1 0.22 +0.3 4,684,962 - Xcc-8004.4924.1 0.22 -0.8 4,684,962 - Xcc-8004.4924.1 0.22 -0.3 4,685,113 + Xcc-8004.4924.1 0.45 +0.7 4,685,113 + Xcc-8004.4924.1 0.45 -0.2 4,685,114 - Xcc-8004.4924.1 0.45 +0.5 4,685,114 - Xcc-8004.4924.1 0.45 -1.4 4,685,114 - Xcc-8004.4924.1 0.45 -0.5 4,685,114 - Xcc-8004.4924.1 0.45 +0.1 4,685,114 - Xcc-8004.4924.1 0.45 +1.2
Or see this region's nucleotide sequence