Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4922.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,681,664	+		Xcc-8004.4920.1	0.15	-0.9
4,681,689	-		Xcc-8004.4920.1	0.18	-1.8
4,681,689	-		Xcc-8004.4920.1	0.18	-2.3
4,681,784	+		Xcc-8004.4920.1	0.26	+0.2
4,681,785	-		Xcc-8004.4920.1	0.26	-1.4
4,681,785	-		Xcc-8004.4920.1	0.26	-1.2
4,681,785	-		Xcc-8004.4920.1	0.26	-1.5
4,681,962	-		Xcc-8004.4920.1	0.42	-1.2
4,681,962	-		Xcc-8004.4920.1	0.42	-1.2
4,682,132	+		Xcc-8004.4920.1	0.57	-0.6
4,682,132	+		Xcc-8004.4920.1	0.57	-2.1
4,682,132	+		Xcc-8004.4920.1	0.57	-0.5
4,682,211	+		Xcc-8004.4920.1	0.64	-0.9
4,682,211	+		Xcc-8004.4920.1	0.64	-1.3
4,682,212	-		Xcc-8004.4920.1	0.64	+0.5
4,682,213	+		Xcc-8004.4920.1	0.64	-0.3
4,682,213	+		Xcc-8004.4920.1	0.64	+0.1
4,682,213	+		Xcc-8004.4920.1	0.64	-0.3
4,682,213	+		Xcc-8004.4920.1	0.64	+0.1
4,682,213	+		Xcc-8004.4920.1	0.64	+0.7
4,682,213	+		Xcc-8004.4920.1	0.64	-1.2
4,682,213	+		Xcc-8004.4920.1	0.64	+1.4
4,682,213	+		Xcc-8004.4920.1	0.64	-2.0
4,682,213	+		Xcc-8004.4920.1	0.64	-0.1
4,682,213	+		Xcc-8004.4920.1	0.64	+0.7
4,682,214	-		Xcc-8004.4920.1	0.64	+0.7
4,682,214	-		Xcc-8004.4920.1	0.64	-1.2
4,682,214	-		Xcc-8004.4920.1	0.64	-0.3
4,682,214	-		Xcc-8004.4920.1	0.64	+0.0
4,682,279	+		Xcc-8004.4920.1	0.70	+1.5
4,682,279	+		Xcc-8004.4920.1	0.70	-0.9
4,682,279	+		Xcc-8004.4920.1	0.70	-1.1
4,682,279	+		Xcc-8004.4920.1	0.70	+1.3
4,682,280	-		Xcc-8004.4920.1	0.70	-0.5
4,682,280	-		Xcc-8004.4920.1	0.70	+0.1
4,682,280	-		Xcc-8004.4920.1	0.70	-0.1
4,682,280	-		Xcc-8004.4920.1	0.70	+0.6
4,682,280	-		Xcc-8004.4920.1	0.70	-0.6
4,682,318	+		Xcc-8004.4920.1	0.74	-0.7
4,682,318	+		Xcc-8004.4920.1	0.74	-1.2
4,682,318	+		Xcc-8004.4920.1	0.74	+0.4
4,682,423	-		Xcc-8004.4920.1	0.83	-0.4
4,682,423	-		Xcc-8004.4920.1	0.83	-1.3
4,682,423	-		Xcc-8004.4920.1	0.83	-0.6
4,682,498	+		Xcc-8004.4920.1	0.90	-0.8
4,682,499	-		Xcc-8004.4920.1	0.90	+0.3
4,682,499	-		Xcc-8004.4920.1	0.90	-0.3
4,682,499	-		Xcc-8004.4920.1	0.90	-0.8
4,682,624	+				+0.3
4,682,624	+				+0.2
4,682,624	+				+0.0
4,682,625	-				-2.5
4,682,671	+				+0.7
4,682,671	+				+1.2
4,682,671	+				-0.9
4,682,671	+				-0.3
4,682,671	+				-1.3
4,682,671	+				-0.4
4,682,672	-				+0.5
4,682,672	-				-0.0
4,682,672	-				+1.6
4,682,672	-				-0.0
4,682,672	-				-1.2
4,682,672	-				-1.3
4,682,672	-				+0.1
4,682,845	-		Xcc-8004.4922.1	0.21	-0.3
4,683,167	+		Xcc-8004.4922.1	0.52	+0.3
4,683,167	+		Xcc-8004.4922.1	0.52	+0.3
4,683,167	+		Xcc-8004.4922.1	0.52	-0.5
4,683,167	+		Xcc-8004.4922.1	0.52	-1.8
4,683,167	+		Xcc-8004.4922.1	0.52	-0.4
4,683,167	+		Xcc-8004.4922.1	0.52	+0.2
4,683,168	-		Xcc-8004.4922.1	0.52	-0.6
4,683,168	-		Xcc-8004.4922.1	0.52	+0.1
4,683,350	+		Xcc-8004.4922.1	0.69	-0.6
4,683,350	+		Xcc-8004.4922.1	0.69	-0.7
4,683,350	+		Xcc-8004.4922.1	0.69	-0.9
4,683,350	+		Xcc-8004.4922.1	0.69	-1.0
4,683,350	+		Xcc-8004.4922.1	0.69	+1.1
4,683,350	+		Xcc-8004.4922.1	0.69	-1.3
4,683,351	-		Xcc-8004.4922.1	0.69	+0.2
4,683,351	-		Xcc-8004.4922.1	0.69	-1.3
4,683,351	-		Xcc-8004.4922.1	0.69	+0.7
4,683,351	-		Xcc-8004.4922.1	0.69	+1.3
4,683,351	-		Xcc-8004.4922.1	0.69	-0.6
4,683,351	-		Xcc-8004.4922.1	0.69	-0.5
4,683,351	-		Xcc-8004.4922.1	0.69	-0.9
4,683,425	+		Xcc-8004.4922.1	0.76	-0.1
4,683,425	+		Xcc-8004.4922.1	0.76	+0.8
4,683,426	-		Xcc-8004.4922.1	0.76	-1.5
4,683,426	-		Xcc-8004.4922.1	0.76	+0.2
4,683,426	-		Xcc-8004.4922.1	0.76	+0.0
4,683,709	+				-0.6
4,683,709	+				-1.0
4,683,709	+				+0.3
4,683,710	-				+0.3
4,683,710	-				-0.3
4,683,710	-				-0.5
4,683,710	-				-0.6
4,683,710	-				-1.4
4,683,711	+				-0.5
4,683,711	+				-2.2
4,683,711	+				+0.3
4,683,711	+				+0.1
4,683,711	+				+1.1
4,683,711	+				+0.1
4,683,711	+				-1.1
4,683,711	+				-0.4
4,683,711	+				+0.0
4,683,711	+				-0.0
4,683,711	+				-0.9
4,683,712	-				+0.1
4,683,712	-				-0.2
4,683,712	-				+1.8
4,683,712	-				-2.4
4,683,712	-				-0.1
4,683,712	-				-0.4
4,683,733	+				+1.2
4,683,734	-				+0.1
4,683,734	-				+0.6
4,683,734	-				+0.0
4,683,734	-				-0.3
4,683,735	+				-0.9
4,683,735	+				+0.1
4,683,735	+				+3.3
4,683,735	+				-0.3
4,683,736	-				+1.1
4,683,743	+				-0.3
4,683,743	+				-0.6
4,683,743	+				+1.0
4,683,743	+				+0.6
4,683,743	+				+0.3
4,683,743	+				+0.1
4,683,743	+				+0.3
4,683,744	+				-0.1
4,683,744	-				+0.1
4,683,744	-				-0.5
4,683,744	-				+0.1
4,683,744	-				-0.5
4,683,744	-				-0.9
4,683,744	-				+1.0
4,683,746	-				-0.6
4,683,761	+				+0.4
4,683,964	+		Xcc-8004.4923.1	0.26	-1.0
4,683,964	+		Xcc-8004.4923.1	0.26	+1.3
4,683,964	+		Xcc-8004.4923.1	0.26	+0.6
4,683,964	+		Xcc-8004.4923.1	0.26	-0.4
4,683,965	-		Xcc-8004.4923.1	0.27	-0.8
4,683,965	-		Xcc-8004.4923.1	0.27	-0.7
4,683,965	-		Xcc-8004.4923.1	0.27	+0.4
4,684,538	+				+0.2
4,684,538	+				-0.2
4,684,539	-				+2.3
4,684,539	-				-1.5
4,684,539	-				-0.1
4,684,539	-				+0.5
4,684,546	+				+0.4
4,684,546	+				-1.0
4,684,546	+				-0.7
4,684,546	+				+0.0
4,684,546	+				+0.1
4,684,547	-				-0.5
4,684,547	-				-0.2
4,684,547	-				+1.2
4,684,563	+				-0.4