Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4921.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,679,957	+		Xcc-8004.4919.1	0.44	-0.1
4,679,957	+		Xcc-8004.4919.1	0.44	+0.4
4,679,958	-		Xcc-8004.4919.1	0.44	-2.3
4,680,119	+		Xcc-8004.4919.1	0.54	-0.8
4,680,120	-		Xcc-8004.4919.1	0.54	-0.6
4,680,120	-		Xcc-8004.4919.1	0.54	-0.7
4,680,432	+		Xcc-8004.4919.1	0.74	+0.7
4,680,458	+		Xcc-8004.4919.1	0.76	-1.5
4,680,554	+		Xcc-8004.4919.1	0.82	+0.4
4,680,554	+		Xcc-8004.4919.1	0.82	+0.7
4,680,554	+		Xcc-8004.4919.1	0.82	+0.4
4,680,722	+				+0.4
4,680,722	+				-1.0
4,680,722	+				-0.0
4,680,722	+				+0.4
4,680,723	-				+0.4
4,680,850	+				-0.1
4,680,850	+				+1.1
4,680,850	+				-0.2
4,680,850	+				-1.1
4,680,949	+		Xcc-8004.4921.1	0.21	-0.1
4,680,949	+		Xcc-8004.4921.1	0.21	-0.8
4,680,950	-		Xcc-8004.4921.1	0.21	-0.9
4,681,106	-		Xcc-8004.4921.1	0.88	-0.5
4,681,141	+				+0.5
4,681,141	+				+0.4
4,681,142	-				-0.0
4,681,147	+				-0.1
4,681,163	+				-0.1
4,681,180	-				+1.3
4,681,199	+				-1.8
4,681,199	+				-0.6
4,681,199	+				-0.8
4,681,199	+				-0.6
4,681,200	-				+0.1
4,681,234	+				+1.3
4,681,252	+				+0.7
4,681,252	+				-0.7
4,681,253	-				+0.2
4,681,253	-				+0.7
4,681,373	+				-0.3
4,681,374	-				-0.4
4,681,374	-				-1.2
4,681,374	-				+1.7
4,681,404	-				+1.7
4,681,526	-				-0.2
4,681,610	+		Xcc-8004.4920.1	0.11	-0.1
4,681,610	+		Xcc-8004.4920.1	0.11	+1.9
4,681,610	+		Xcc-8004.4920.1	0.11	-0.3
4,681,611	-		Xcc-8004.4920.1	0.11	+0.1
4,681,611	-		Xcc-8004.4920.1	0.11	-1.0
4,681,664	+		Xcc-8004.4920.1	0.15	-0.9
4,681,689	-		Xcc-8004.4920.1	0.18	-1.8
4,681,689	-		Xcc-8004.4920.1	0.18	-2.3
4,681,784	+		Xcc-8004.4920.1	0.26	+0.2
4,681,785	-		Xcc-8004.4920.1	0.26	-1.4
4,681,785	-		Xcc-8004.4920.1	0.26	-1.2
4,681,785	-		Xcc-8004.4920.1	0.26	-1.5
4,681,962	-		Xcc-8004.4920.1	0.42	-1.2
4,681,962	-		Xcc-8004.4920.1	0.42	-1.2
4,682,132	+		Xcc-8004.4920.1	0.57	-0.6
4,682,132	+		Xcc-8004.4920.1	0.57	-2.1
4,682,132	+		Xcc-8004.4920.1	0.57	-0.5