Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4919.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4917.1 and Xcc-8004.4918.1 are separated by 10 nucleotidesXcc-8004.4918.1 and Xcc-8004.4919.1 are separated by 381 nucleotidesXcc-8004.4919.1 and Xcc-8004.4921.1 are separated by 71 nucleotidesXcc-8004.4921.1 and Xcc-8004.4920.1 are separated by 357 nucleotides Xcc-8004.4917.1: Xcc-8004.4917.1 - outer membrane lipoprotein Blc, at 4,678,144 to 4,678,701 Xcc-8004.4917.1 Xcc-8004.4918.1: Xcc-8004.4918.1 - FIG01211357: hypothetical protein, at 4,678,712 to 4,678,888 Xcc-8004.4918.1 Xcc-8004.4919.1: Xcc-8004.4919.1 - FIG01210508: hypothetical protein, at 4,679,270 to 4,680,829 Xcc-8004.4919.1 Xcc-8004.4921.1: Xcc-8004.4921.1 - FIG01213962: hypothetical protein, at 4,680,901 to 4,681,134 Xcc-8004.4921.1 Xcc-8004.4920.1: Xcc-8004.4920.1 - POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE), at 4,681,492 to 4,682,613 Xcc-8004.4920.1 Position (kb) 4679 4680 4681Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4678.310 kb on + strand, within Xcc-8004.4917.1at 4678.310 kb on + strand, within Xcc-8004.4917.1at 4678.310 kb on + strand, within Xcc-8004.4917.1at 4678.310 kb on + strand, within Xcc-8004.4917.1at 4678.310 kb on + strand, within Xcc-8004.4917.1at 4678.310 kb on + strand, within Xcc-8004.4917.1at 4678.311 kb on - strand, within Xcc-8004.4917.1at 4678.311 kb on - strand, within Xcc-8004.4917.1at 4678.311 kb on - strand, within Xcc-8004.4917.1at 4678.311 kb on - strand, within Xcc-8004.4917.1at 4678.321 kb on + strand, within Xcc-8004.4917.1at 4678.492 kb on + strand, within Xcc-8004.4917.1at 4678.493 kb on - strand, within Xcc-8004.4917.1at 4678.519 kb on + strand, within Xcc-8004.4917.1at 4678.519 kb on + strand, within Xcc-8004.4917.1at 4678.519 kb on + strand, within Xcc-8004.4917.1at 4678.520 kb on - strand, within Xcc-8004.4917.1at 4678.555 kb on + strand, within Xcc-8004.4917.1at 4678.555 kb on + strand, within Xcc-8004.4917.1at 4678.555 kb on + strand, within Xcc-8004.4917.1at 4678.556 kb on - strand, within Xcc-8004.4917.1at 4678.556 kb on - strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.609 kb on + strand, within Xcc-8004.4917.1at 4678.610 kb on - strand, within Xcc-8004.4917.1at 4678.610 kb on - strand, within Xcc-8004.4917.1at 4678.610 kb on - strand, within Xcc-8004.4917.1at 4678.668 kb on + strandat 4678.668 kb on + strandat 4678.713 kb on + strandat 4678.713 kb on + strandat 4678.713 kb on + strandat 4678.713 kb on + strandat 4678.714 kb on - strandat 4678.714 kb on - strandat 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.797 kb on + strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.798 kb on - strand, within Xcc-8004.4918.1at 4678.965 kb on - strandat 4678.995 kb on + strandat 4678.995 kb on + strandat 4678.995 kb on + strandat 4678.996 kb on - strandat 4679.041 kb on - strandat 4679.092 kb on + strandat 4679.093 kb on - strandat 4679.093 kb on - strandat 4679.093 kb on - strandat 4679.093 kb on - strandat 4679.093 kb on - strandat 4679.172 kb on + strandat 4679.172 kb on + strandat 4679.172 kb on + strandat 4679.172 kb on + strandat 4679.172 kb on + strandat 4679.172 kb on + strandat 4679.172 kb on + strandat 4679.172 kb on + strandat 4679.173 kb on - strandat 4679.173 kb on - strandat 4679.173 kb on - strandat 4679.173 kb on - strandat 4679.345 kb on + strandat 4679.345 kb on + strandat 4679.346 kb on - strandat 4679.346 kb on - strandat 4679.346 kb on - strandat 4679.346 kb on - strandat 4679.346 kb on - strandat 4679.348 kb on + strandat 4679.349 kb on - strandat 4679.349 kb on - strandat 4679.349 kb on - strandat 4679.723 kb on + strand, within Xcc-8004.4919.1at 4679.723 kb on + strand, within Xcc-8004.4919.1at 4679.723 kb on + strand, within Xcc-8004.4919.1at 4679.723 kb on + strand, within Xcc-8004.4919.1at 4679.724 kb on - strand, within Xcc-8004.4919.1at 4679.724 kb on - strand, within Xcc-8004.4919.1at 4679.724 kb on - strand, within Xcc-8004.4919.1at 4679.724 kb on - strand, within Xcc-8004.4919.1at 4679.957 kb on + strand, within Xcc-8004.4919.1at 4679.957 kb on + strand, within Xcc-8004.4919.1at 4679.958 kb on - strand, within Xcc-8004.4919.1at 4680.119 kb on + strand, within Xcc-8004.4919.1at 4680.120 kb on - strand, within Xcc-8004.4919.1at 4680.120 kb on - strand, within Xcc-8004.4919.1at 4680.432 kb on + strand, within Xcc-8004.4919.1at 4680.458 kb on + strand, within Xcc-8004.4919.1at 4680.554 kb on + strand, within Xcc-8004.4919.1at 4680.554 kb on + strand, within Xcc-8004.4919.1at 4680.554 kb on + strand, within Xcc-8004.4919.1at 4680.722 kb on + strandat 4680.722 kb on + strandat 4680.722 kb on + strandat 4680.722 kb on + strandat 4680.723 kb on - strandat 4680.850 kb on + strandat 4680.850 kb on + strandat 4680.850 kb on + strandat 4680.850 kb on + strandat 4680.949 kb on + strand, within Xcc-8004.4921.1at 4680.949 kb on + strand, within Xcc-8004.4921.1at 4680.950 kb on - strand, within Xcc-8004.4921.1at 4681.106 kb on - strand, within Xcc-8004.4921.1at 4681.141 kb on + strandat 4681.141 kb on + strandat 4681.142 kb on - strandat 4681.147 kb on + strandat 4681.163 kb on + strandat 4681.180 kb on - strandat 4681.199 kb on + strandat 4681.199 kb on + strandat 4681.199 kb on + strandat 4681.199 kb on + strandat 4681.200 kb on - strandat 4681.234 kb on + strandat 4681.252 kb on + strandat 4681.252 kb on + strandat 4681.253 kb on - strandat 4681.253 kb on - strandat 4681.373 kb on + strandat 4681.374 kb on - strandat 4681.374 kb on - strandat 4681.374 kb on - strandat 4681.404 kb on - strandat 4681.526 kb on - strandat 4681.610 kb on + strand, within Xcc-8004.4920.1at 4681.610 kb on + strand, within Xcc-8004.4920.1at 4681.610 kb on + strand, within Xcc-8004.4920.1at 4681.611 kb on - strand, within Xcc-8004.4920.1at 4681.611 kb on - strand, within Xcc-8004.4920.1at 4681.664 kb on + strand, within Xcc-8004.4920.1at 4681.689 kb on - strand, within Xcc-8004.4920.1at 4681.689 kb on - strand, within Xcc-8004.4920.1at 4681.784 kb on + strand, within Xcc-8004.4920.1at 4681.785 kb on - strand, within Xcc-8004.4920.1at 4681.785 kb on - strand, within Xcc-8004.4920.1at 4681.785 kb on - strand, within Xcc-8004.4920.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,678,310 + Xcc-8004.4917.1 0.30 +1.0
4,678,310 + Xcc-8004.4917.1 0.30 +0.8
4,678,310 + Xcc-8004.4917.1 0.30 -0.3
4,678,310 + Xcc-8004.4917.1 0.30 +0.3
4,678,310 + Xcc-8004.4917.1 0.30 +1.8
4,678,310 + Xcc-8004.4917.1 0.30 +0.2
4,678,311 - Xcc-8004.4917.1 0.30 +1.6
4,678,311 - Xcc-8004.4917.1 0.30 +1.7
4,678,311 - Xcc-8004.4917.1 0.30 -0.1
4,678,311 - Xcc-8004.4917.1 0.30 +0.3
4,678,321 + Xcc-8004.4917.1 0.32 +0.9
4,678,492 + Xcc-8004.4917.1 0.62 +0.1
4,678,493 - Xcc-8004.4917.1 0.63 +1.4
4,678,519 + Xcc-8004.4917.1 0.67 -0.2
4,678,519 + Xcc-8004.4917.1 0.67 -0.5
4,678,519 + Xcc-8004.4917.1 0.67 +0.0
4,678,520 - Xcc-8004.4917.1 0.67 +0.5
4,678,555 + Xcc-8004.4917.1 0.74 -2.2
4,678,555 + Xcc-8004.4917.1 0.74 +1.0
4,678,555 + Xcc-8004.4917.1 0.74 +1.4
4,678,556 - Xcc-8004.4917.1 0.74 -0.3
4,678,556 - Xcc-8004.4917.1 0.74 +1.7
4,678,609 + Xcc-8004.4917.1 0.83 -0.1
4,678,609 + Xcc-8004.4917.1 0.83 -0.5
4,678,609 + Xcc-8004.4917.1 0.83 +0.2
4,678,609 + Xcc-8004.4917.1 0.83 +0.4
4,678,609 + Xcc-8004.4917.1 0.83 +1.1
4,678,609 + Xcc-8004.4917.1 0.83 +2.4
4,678,609 + Xcc-8004.4917.1 0.83 +1.0
4,678,609 + Xcc-8004.4917.1 0.83 +1.0
4,678,609 + Xcc-8004.4917.1 0.83 -0.8
4,678,610 - Xcc-8004.4917.1 0.84 +0.2
4,678,610 - Xcc-8004.4917.1 0.84 -1.5
4,678,610 - Xcc-8004.4917.1 0.84 +0.4
4,678,668 + +0.4
4,678,668 + +0.5
4,678,713 + -0.6
4,678,713 + +0.3
4,678,713 + +0.0
4,678,713 + +0.4
4,678,714 - -1.0
4,678,714 - -0.6
4,678,797 + Xcc-8004.4918.1 0.48 -0.9
4,678,797 + Xcc-8004.4918.1 0.48 +0.1
4,678,797 + Xcc-8004.4918.1 0.48 -0.6
4,678,797 + Xcc-8004.4918.1 0.48 -1.4
4,678,797 + Xcc-8004.4918.1 0.48 +1.2
4,678,797 + Xcc-8004.4918.1 0.48 +1.7
4,678,797 + Xcc-8004.4918.1 0.48 +0.4
4,678,797 + Xcc-8004.4918.1 0.48 +0.6
4,678,797 + Xcc-8004.4918.1 0.48 +0.2
4,678,797 + Xcc-8004.4918.1 0.48 +0.6
4,678,798 - Xcc-8004.4918.1 0.49 +0.1
4,678,798 - Xcc-8004.4918.1 0.49 +0.5
4,678,798 - Xcc-8004.4918.1 0.49 -0.6
4,678,798 - Xcc-8004.4918.1 0.49 -0.5
4,678,798 - Xcc-8004.4918.1 0.49 -0.0
4,678,798 - Xcc-8004.4918.1 0.49 -0.6
4,678,798 - Xcc-8004.4918.1 0.49 -0.4
4,678,798 - Xcc-8004.4918.1 0.49 +1.0
4,678,798 - Xcc-8004.4918.1 0.49 +0.7
4,678,798 - Xcc-8004.4918.1 0.49 -1.7
4,678,798 - Xcc-8004.4918.1 0.49 -0.3
4,678,965 - -0.6
4,678,995 + -0.6
4,678,995 + +1.4
4,678,995 + +0.3
4,678,996 - +0.2
4,679,041 - -0.3
4,679,092 + -1.8
4,679,093 - +0.3
4,679,093 - +0.4
4,679,093 - -0.7
4,679,093 - +0.7
4,679,093 - +0.5
4,679,172 + +1.1
4,679,172 + -0.6
4,679,172 + -0.2
4,679,172 + +3.3
4,679,172 + +0.1
4,679,172 + -0.7
4,679,172 + -1.9
4,679,172 + -1.3
4,679,173 - -0.4
4,679,173 - -0.2
4,679,173 - -0.8
4,679,173 - +2.2
4,679,345 + -0.6
4,679,345 + -1.5
4,679,346 - -0.2
4,679,346 - -0.5
4,679,346 - -0.0
4,679,346 - +0.4
4,679,346 - -1.6
4,679,348 + +1.0
4,679,349 - -0.1
4,679,349 - +0.0
4,679,349 - +1.2
4,679,723 + Xcc-8004.4919.1 0.29 +0.5
4,679,723 + Xcc-8004.4919.1 0.29 +0.1
4,679,723 + Xcc-8004.4919.1 0.29 +0.4
4,679,723 + Xcc-8004.4919.1 0.29 +0.6
4,679,724 - Xcc-8004.4919.1 0.29 +0.8
4,679,724 - Xcc-8004.4919.1 0.29 -0.6
4,679,724 - Xcc-8004.4919.1 0.29 -0.5
4,679,724 - Xcc-8004.4919.1 0.29 -1.2
4,679,957 + Xcc-8004.4919.1 0.44 -0.1
4,679,957 + Xcc-8004.4919.1 0.44 +0.4
4,679,958 - Xcc-8004.4919.1 0.44 -2.3
4,680,119 + Xcc-8004.4919.1 0.54 -0.8
4,680,120 - Xcc-8004.4919.1 0.54 -0.6
4,680,120 - Xcc-8004.4919.1 0.54 -0.7
4,680,432 + Xcc-8004.4919.1 0.74 +0.7
4,680,458 + Xcc-8004.4919.1 0.76 -1.5
4,680,554 + Xcc-8004.4919.1 0.82 +0.4
4,680,554 + Xcc-8004.4919.1 0.82 +0.7
4,680,554 + Xcc-8004.4919.1 0.82 +0.4
4,680,722 + +0.4
4,680,722 + -1.0
4,680,722 + -0.0
4,680,722 + +0.4
4,680,723 - +0.4
4,680,850 + -0.1
4,680,850 + +1.1
4,680,850 + -0.2
4,680,850 + -1.1
4,680,949 + Xcc-8004.4921.1 0.21 -0.1
4,680,949 + Xcc-8004.4921.1 0.21 -0.8
4,680,950 - Xcc-8004.4921.1 0.21 -0.9
4,681,106 - Xcc-8004.4921.1 0.88 -0.5
4,681,141 + +0.5
4,681,141 + +0.4
4,681,142 - -0.0
4,681,147 + -0.1
4,681,163 + -0.1
4,681,180 - +1.3
4,681,199 + -1.8
4,681,199 + -0.6
4,681,199 + -0.8
4,681,199 + -0.6
4,681,200 - +0.1
4,681,234 + +1.3
4,681,252 + +0.7
4,681,252 + -0.7
4,681,253 - +0.2
4,681,253 - +0.7
4,681,373 + -0.3
4,681,374 - -0.4
4,681,374 - -1.2
4,681,374 - +1.7
4,681,404 - +1.7
4,681,526 - -0.2
4,681,610 + Xcc-8004.4920.1 0.11 -0.1
4,681,610 + Xcc-8004.4920.1 0.11 +1.9
4,681,610 + Xcc-8004.4920.1 0.11 -0.3
4,681,611 - Xcc-8004.4920.1 0.11 +0.1
4,681,611 - Xcc-8004.4920.1 0.11 -1.0
4,681,664 + Xcc-8004.4920.1 0.15 -0.9
4,681,689 - Xcc-8004.4920.1 0.18 -1.8
4,681,689 - Xcc-8004.4920.1 0.18 -2.3
4,681,784 + Xcc-8004.4920.1 0.26 +0.2
4,681,785 - Xcc-8004.4920.1 0.26 -1.4
4,681,785 - Xcc-8004.4920.1 0.26 -1.2
4,681,785 - Xcc-8004.4920.1 0.26 -1.5

Or see this region's nucleotide sequence