Experiment: Pectin from apple 2 g/L (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4916.1 and Xcc-8004.4917.1 are separated by 333 nucleotides Xcc-8004.4917.1 and Xcc-8004.4918.1 are separated by 10 nucleotides Xcc-8004.4918.1 and Xcc-8004.4919.1 are separated by 381 nucleotides
Xcc-8004.4916.1: Xcc-8004.4916.1 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 4,676,290 to 4,677,810
Xcc-8004.4916.1
Xcc-8004.4917.1: Xcc-8004.4917.1 - outer membrane lipoprotein Blc, at 4,678,144 to 4,678,701
Xcc-8004.4917.1
Xcc-8004.4918.1: Xcc-8004.4918.1 - FIG01211357: hypothetical protein, at 4,678,712 to 4,678,888
Xcc-8004.4918.1
Xcc-8004.4919.1: Xcc-8004.4919.1 - FIG01210508: hypothetical protein, at 4,679,270 to 4,680,829
Xcc-8004.4919.1
Position (kb) 4678
4679 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4677.766 kb on + strand at 4677.792 kb on + strand at 4677.792 kb on + strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.833 kb on - strand at 4677.833 kb on - strand at 4677.939 kb on + strand at 4678.027 kb on - strand at 4678.027 kb on - strand at 4678.109 kb on - strand at 4678.109 kb on - strand at 4678.157 kb on + strand at 4678.157 kb on + strand at 4678.158 kb on - strand at 4678.158 kb on - strand at 4678.158 kb on - strand at 4678.244 kb on - strand, within Xcc-8004.4917.1 at 4678.244 kb on - strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.321 kb on + strand, within Xcc-8004.4917.1 at 4678.492 kb on + strand, within Xcc-8004.4917.1 at 4678.493 kb on - strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.520 kb on - strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.668 kb on + strand at 4678.668 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.714 kb on - strand at 4678.714 kb on - strand at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.965 kb on - strand at 4678.995 kb on + strand at 4678.995 kb on + strand at 4678.995 kb on + strand at 4678.996 kb on - strand at 4679.041 kb on - strand at 4679.092 kb on + strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.345 kb on + strand at 4679.345 kb on + strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.348 kb on + strand at 4679.349 kb on - strand at 4679.349 kb on - strand at 4679.349 kb on - strand at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C) remove 4,677,766 + -0.2 4,677,792 + -0.1 4,677,792 + -0.4 4,677,793 - +0.1 4,677,793 - +2.3 4,677,793 - +0.1 4,677,793 - -0.8 4,677,793 - -0.8 4,677,793 - -0.6 4,677,830 + -1.2 4,677,830 + -0.6 4,677,830 + -1.7 4,677,830 + +0.1 4,677,830 + +0.3 4,677,830 + -1.5 4,677,830 + -0.0 4,677,831 - +0.0 4,677,831 - -0.4 4,677,831 - +0.1 4,677,831 - +0.4 4,677,832 + -0.3 4,677,832 + -0.9 4,677,832 + +0.2 4,677,832 + -0.1 4,677,833 - +0.6 4,677,833 - -1.2 4,677,939 + -0.5 4,678,027 - -0.3 4,678,027 - -1.2 4,678,109 - -0.2 4,678,109 - +0.2 4,678,157 + +0.6 4,678,157 + -0.0 4,678,158 - +0.3 4,678,158 - +0.0 4,678,158 - +0.2 4,678,244 - Xcc-8004.4917.1 0.18 +0.3 4,678,244 - Xcc-8004.4917.1 0.18 -0.9 4,678,310 + Xcc-8004.4917.1 0.30 +1.0 4,678,310 + Xcc-8004.4917.1 0.30 +0.8 4,678,310 + Xcc-8004.4917.1 0.30 -0.3 4,678,310 + Xcc-8004.4917.1 0.30 +0.3 4,678,310 + Xcc-8004.4917.1 0.30 +1.8 4,678,310 + Xcc-8004.4917.1 0.30 +0.2 4,678,311 - Xcc-8004.4917.1 0.30 +1.6 4,678,311 - Xcc-8004.4917.1 0.30 +1.7 4,678,311 - Xcc-8004.4917.1 0.30 -0.1 4,678,311 - Xcc-8004.4917.1 0.30 +0.3 4,678,321 + Xcc-8004.4917.1 0.32 +0.9 4,678,492 + Xcc-8004.4917.1 0.62 +0.1 4,678,493 - Xcc-8004.4917.1 0.63 +1.4 4,678,519 + Xcc-8004.4917.1 0.67 -0.2 4,678,519 + Xcc-8004.4917.1 0.67 -0.5 4,678,519 + Xcc-8004.4917.1 0.67 +0.0 4,678,520 - Xcc-8004.4917.1 0.67 +0.5 4,678,555 + Xcc-8004.4917.1 0.74 -2.2 4,678,555 + Xcc-8004.4917.1 0.74 +1.0 4,678,555 + Xcc-8004.4917.1 0.74 +1.4 4,678,556 - Xcc-8004.4917.1 0.74 -0.3 4,678,556 - Xcc-8004.4917.1 0.74 +1.7 4,678,609 + Xcc-8004.4917.1 0.83 -0.1 4,678,609 + Xcc-8004.4917.1 0.83 -0.5 4,678,609 + Xcc-8004.4917.1 0.83 +0.2 4,678,609 + Xcc-8004.4917.1 0.83 +0.4 4,678,609 + Xcc-8004.4917.1 0.83 +1.1 4,678,609 + Xcc-8004.4917.1 0.83 +2.4 4,678,609 + Xcc-8004.4917.1 0.83 +1.0 4,678,609 + Xcc-8004.4917.1 0.83 +1.0 4,678,609 + Xcc-8004.4917.1 0.83 -0.8 4,678,610 - Xcc-8004.4917.1 0.84 +0.2 4,678,610 - Xcc-8004.4917.1 0.84 -1.5 4,678,610 - Xcc-8004.4917.1 0.84 +0.4 4,678,668 + +0.4 4,678,668 + +0.5 4,678,713 + -0.6 4,678,713 + +0.3 4,678,713 + +0.0 4,678,713 + +0.4 4,678,714 - -1.0 4,678,714 - -0.6 4,678,797 + Xcc-8004.4918.1 0.48 -0.9 4,678,797 + Xcc-8004.4918.1 0.48 +0.1 4,678,797 + Xcc-8004.4918.1 0.48 -0.6 4,678,797 + Xcc-8004.4918.1 0.48 -1.4 4,678,797 + Xcc-8004.4918.1 0.48 +1.2 4,678,797 + Xcc-8004.4918.1 0.48 +1.7 4,678,797 + Xcc-8004.4918.1 0.48 +0.4 4,678,797 + Xcc-8004.4918.1 0.48 +0.6 4,678,797 + Xcc-8004.4918.1 0.48 +0.2 4,678,797 + Xcc-8004.4918.1 0.48 +0.6 4,678,798 - Xcc-8004.4918.1 0.49 +0.1 4,678,798 - Xcc-8004.4918.1 0.49 +0.5 4,678,798 - Xcc-8004.4918.1 0.49 -0.6 4,678,798 - Xcc-8004.4918.1 0.49 -0.5 4,678,798 - Xcc-8004.4918.1 0.49 -0.0 4,678,798 - Xcc-8004.4918.1 0.49 -0.6 4,678,798 - Xcc-8004.4918.1 0.49 -0.4 4,678,798 - Xcc-8004.4918.1 0.49 +1.0 4,678,798 - Xcc-8004.4918.1 0.49 +0.7 4,678,798 - Xcc-8004.4918.1 0.49 -1.7 4,678,798 - Xcc-8004.4918.1 0.49 -0.3 4,678,965 - -0.6 4,678,995 + -0.6 4,678,995 + +1.4 4,678,995 + +0.3 4,678,996 - +0.2 4,679,041 - -0.3 4,679,092 + -1.8 4,679,093 - +0.3 4,679,093 - +0.4 4,679,093 - -0.7 4,679,093 - +0.7 4,679,093 - +0.5 4,679,172 + +1.1 4,679,172 + -0.6 4,679,172 + -0.2 4,679,172 + +3.3 4,679,172 + +0.1 4,679,172 + -0.7 4,679,172 + -1.9 4,679,172 + -1.3 4,679,173 - -0.4 4,679,173 - -0.2 4,679,173 - -0.8 4,679,173 - +2.2 4,679,345 + -0.6 4,679,345 + -1.5 4,679,346 - -0.2 4,679,346 - -0.5 4,679,346 - -0.0 4,679,346 - +0.4 4,679,346 - -1.6 4,679,348 + +1.0 4,679,349 - -0.1 4,679,349 - +0.0 4,679,349 - +1.2 4,679,723 + Xcc-8004.4919.1 0.29 +0.5 4,679,723 + Xcc-8004.4919.1 0.29 +0.1 4,679,723 + Xcc-8004.4919.1 0.29 +0.4 4,679,723 + Xcc-8004.4919.1 0.29 +0.6 4,679,724 - Xcc-8004.4919.1 0.29 +0.8 4,679,724 - Xcc-8004.4919.1 0.29 -0.6 4,679,724 - Xcc-8004.4919.1 0.29 -0.5 4,679,724 - Xcc-8004.4919.1 0.29 -1.2
Or see this region's nucleotide sequence