Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4838.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4835.1 and Xcc-8004.4836.1 are separated by 19 nucleotidesXcc-8004.4836.1 and Xcc-8004.4838.1 are separated by 2 nucleotidesXcc-8004.4838.1 and Xcc-8004.4839.1 are separated by 10 nucleotidesXcc-8004.4839.1 and Xcc-8004.4840.1 are separated by 27 nucleotides Xcc-8004.4835.1: Xcc-8004.4835.1 - Disulphide-isomerase, at 4,600,387 to 4,601,964 Xcc-8004.4835.1 Xcc-8004.4836.1: Xcc-8004.4836.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,601,984 to 4,602,880 Xcc-8004.4836.1 Xcc-8004.4838.1: Xcc-8004.4838.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,602,883 to 4,604,046 Xcc-8004.4838.1 Xcc-8004.4839.1: Xcc-8004.4839.1 - FIG01211359: hypothetical protein, at 4,604,057 to 4,604,632 Xcc-8004.4839.1 Xcc-8004.4840.1: Xcc-8004.4840.1 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 4,604,660 to 4,605,385 Xcc-8004.4840.1 Position (kb) 4602 4603 4604 4605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4602.045 kb on + strandat 4602.156 kb on + strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.241 kb on + strand, within Xcc-8004.4836.1at 4602.486 kb on + strand, within Xcc-8004.4836.1at 4602.487 kb on - strand, within Xcc-8004.4836.1at 4602.487 kb on - strand, within Xcc-8004.4836.1at 4602.495 kb on + strand, within Xcc-8004.4836.1at 4602.495 kb on + strand, within Xcc-8004.4836.1at 4602.623 kb on + strand, within Xcc-8004.4836.1at 4602.624 kb on - strand, within Xcc-8004.4836.1at 4602.624 kb on - strand, within Xcc-8004.4836.1at 4602.690 kb on - strand, within Xcc-8004.4836.1at 4602.690 kb on - strand, within Xcc-8004.4836.1at 4602.731 kb on - strand, within Xcc-8004.4836.1at 4602.758 kb on + strand, within Xcc-8004.4836.1at 4602.758 kb on + strand, within Xcc-8004.4836.1at 4602.759 kb on - strand, within Xcc-8004.4836.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.097 kb on + strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.098 kb on - strand, within Xcc-8004.4838.1at 4603.178 kb on + strand, within Xcc-8004.4838.1at 4603.179 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.305 kb on - strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.408 kb on + strand, within Xcc-8004.4838.1at 4603.409 kb on - strand, within Xcc-8004.4838.1at 4603.582 kb on - strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1at 4603.898 kb on + strand, within Xcc-8004.4838.1at 4603.899 kb on - strand, within Xcc-8004.4838.1at 4604.122 kb on - strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.418 kb on + strand, within Xcc-8004.4839.1at 4604.418 kb on + strand, within Xcc-8004.4839.1at 4604.792 kb on + strand, within Xcc-8004.4840.1at 4604.793 kb on - strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,602,045 + -1.6
4,602,156 + Xcc-8004.4836.1 0.19 +0.5
4,602,157 - Xcc-8004.4836.1 0.19 -0.1
4,602,157 - Xcc-8004.4836.1 0.19 -1.1
4,602,157 - Xcc-8004.4836.1 0.19 -1.3
4,602,220 - Xcc-8004.4836.1 0.26 +0.7
4,602,220 - Xcc-8004.4836.1 0.26 -0.8
4,602,220 - Xcc-8004.4836.1 0.26 -1.6
4,602,241 + Xcc-8004.4836.1 0.29 +0.5
4,602,486 + Xcc-8004.4836.1 0.56 -0.5
4,602,487 - Xcc-8004.4836.1 0.56 +1.0
4,602,487 - Xcc-8004.4836.1 0.56 -1.5
4,602,495 + Xcc-8004.4836.1 0.57 -0.9
4,602,495 + Xcc-8004.4836.1 0.57 +0.9
4,602,623 + Xcc-8004.4836.1 0.71 -0.5
4,602,624 - Xcc-8004.4836.1 0.71 +0.1
4,602,624 - Xcc-8004.4836.1 0.71 -1.1
4,602,690 - Xcc-8004.4836.1 0.79 -0.5
4,602,690 - Xcc-8004.4836.1 0.79 -1.6
4,602,731 - Xcc-8004.4836.1 0.83 -1.5
4,602,758 + Xcc-8004.4836.1 0.86 -1.3
4,602,758 + Xcc-8004.4836.1 0.86 -0.1
4,602,759 - Xcc-8004.4836.1 0.86 +0.6
4,603,097 + Xcc-8004.4838.1 0.18 +0.5
4,603,097 + Xcc-8004.4838.1 0.18 -2.4
4,603,097 + Xcc-8004.4838.1 0.18 -0.6
4,603,098 - Xcc-8004.4838.1 0.18 -0.2
4,603,098 - Xcc-8004.4838.1 0.18 -0.8
4,603,098 - Xcc-8004.4838.1 0.18 -0.9
4,603,178 + Xcc-8004.4838.1 0.25 +2.7
4,603,179 - Xcc-8004.4838.1 0.25 +0.0
4,603,305 - Xcc-8004.4838.1 0.36 -0.6
4,603,305 - Xcc-8004.4838.1 0.36 -0.6
4,603,305 - Xcc-8004.4838.1 0.36 +0.0
4,603,408 + Xcc-8004.4838.1 0.45 -0.5
4,603,408 + Xcc-8004.4838.1 0.45 +0.6
4,603,408 + Xcc-8004.4838.1 0.45 -2.1
4,603,408 + Xcc-8004.4838.1 0.45 +0.2
4,603,409 - Xcc-8004.4838.1 0.45 +1.1
4,603,582 - Xcc-8004.4838.1 0.60 +0.5
4,603,667 + Xcc-8004.4838.1 0.67 -0.9
4,603,667 + Xcc-8004.4838.1 0.67 -0.6
4,603,667 + Xcc-8004.4838.1 0.67 -0.1
4,603,667 + Xcc-8004.4838.1 0.67 +1.3
4,603,667 + Xcc-8004.4838.1 0.67 +0.2
4,603,667 + Xcc-8004.4838.1 0.67 -0.3
4,603,668 - Xcc-8004.4838.1 0.67 +0.1
4,603,668 - Xcc-8004.4838.1 0.67 +0.2
4,603,668 - Xcc-8004.4838.1 0.67 -0.6
4,603,668 - Xcc-8004.4838.1 0.67 -2.4
4,603,668 - Xcc-8004.4838.1 0.67 -0.4
4,603,668 - Xcc-8004.4838.1 0.67 -0.9
4,603,668 - Xcc-8004.4838.1 0.67 -0.5
4,603,668 - Xcc-8004.4838.1 0.67 -0.4
4,603,668 - Xcc-8004.4838.1 0.67 -1.1
4,603,849 + Xcc-8004.4838.1 0.83 +0.2
4,603,849 + Xcc-8004.4838.1 0.83 -1.3
4,603,898 + Xcc-8004.4838.1 0.87 +0.4
4,603,899 - Xcc-8004.4838.1 0.87 -0.5
4,604,122 - Xcc-8004.4839.1 0.11 +0.0
4,604,157 + Xcc-8004.4839.1 0.17 -2.9
4,604,157 + Xcc-8004.4839.1 0.17 -0.2
4,604,157 + Xcc-8004.4839.1 0.17 +0.2
4,604,157 + Xcc-8004.4839.1 0.17 -0.0
4,604,157 + Xcc-8004.4839.1 0.17 -0.7
4,604,157 + Xcc-8004.4839.1 0.17 -0.9
4,604,157 + Xcc-8004.4839.1 0.17 -0.1
4,604,157 + Xcc-8004.4839.1 0.17 +0.7
4,604,157 + Xcc-8004.4839.1 0.17 -0.2
4,604,158 - Xcc-8004.4839.1 0.18 +1.3
4,604,158 - Xcc-8004.4839.1 0.18 +0.4
4,604,158 - Xcc-8004.4839.1 0.18 -0.9
4,604,418 + Xcc-8004.4839.1 0.63 -0.9
4,604,418 + Xcc-8004.4839.1 0.63 -0.0
4,604,792 + Xcc-8004.4840.1 0.18 -0.7
4,604,793 - Xcc-8004.4840.1 0.18 +1.7
4,604,811 + Xcc-8004.4840.1 0.21 +0.3
4,604,811 + Xcc-8004.4840.1 0.21 +1.5
4,604,811 + Xcc-8004.4840.1 0.21 +0.4
4,604,811 + Xcc-8004.4840.1 0.21 +0.6
4,604,811 + Xcc-8004.4840.1 0.21 -0.3
4,604,811 + Xcc-8004.4840.1 0.21 -0.6
4,604,811 + Xcc-8004.4840.1 0.21 -1.4
4,604,812 - Xcc-8004.4840.1 0.21 +2.2
4,604,812 - Xcc-8004.4840.1 0.21 +0.9

Or see this region's nucleotide sequence