Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4835.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4834.1 and Xcc-8004.4835.1 are separated by 229 nucleotidesXcc-8004.4835.1 and Xcc-8004.4836.1 are separated by 19 nucleotidesXcc-8004.4836.1 and Xcc-8004.4838.1 are separated by 2 nucleotides Xcc-8004.4834.1: Xcc-8004.4834.1 - Sodium - Bile acid symporter, at 4,599,165 to 4,600,157 Xcc-8004.4834.1 Xcc-8004.4835.1: Xcc-8004.4835.1 - Disulphide-isomerase, at 4,600,387 to 4,601,964 Xcc-8004.4835.1 Xcc-8004.4836.1: Xcc-8004.4836.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,601,984 to 4,602,880 Xcc-8004.4836.1 Xcc-8004.4838.1: Xcc-8004.4838.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,602,883 to 4,604,046 Xcc-8004.4838.1 Position (kb) 4600 4601 4602Strain fitness (log2 ratio) -2 -1 0 1at 4599.468 kb on + strand, within Xcc-8004.4834.1at 4599.468 kb on + strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.562 kb on + strand, within Xcc-8004.4834.1at 4599.633 kb on - strand, within Xcc-8004.4834.1at 4599.768 kb on + strand, within Xcc-8004.4834.1at 4599.768 kb on + strand, within Xcc-8004.4834.1at 4599.768 kb on + strand, within Xcc-8004.4834.1at 4599.801 kb on + strand, within Xcc-8004.4834.1at 4599.801 kb on + strand, within Xcc-8004.4834.1at 4599.801 kb on + strand, within Xcc-8004.4834.1at 4599.802 kb on - strand, within Xcc-8004.4834.1at 4599.802 kb on - strand, within Xcc-8004.4834.1at 4599.871 kb on + strand, within Xcc-8004.4834.1at 4600.007 kb on - strand, within Xcc-8004.4834.1at 4600.071 kb on + strandat 4600.305 kb on + strandat 4600.305 kb on + strandat 4600.306 kb on - strandat 4600.306 kb on - strandat 4600.600 kb on + strand, within Xcc-8004.4835.1at 4600.600 kb on + strand, within Xcc-8004.4835.1at 4600.600 kb on + strand, within Xcc-8004.4835.1at 4600.601 kb on - strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.951 kb on + strand, within Xcc-8004.4835.1at 4600.952 kb on - strand, within Xcc-8004.4835.1at 4600.952 kb on - strand, within Xcc-8004.4835.1at 4600.952 kb on - strand, within Xcc-8004.4835.1at 4600.952 kb on - strand, within Xcc-8004.4835.1at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.177 kb on - strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.269 kb on + strand, within Xcc-8004.4835.1at 4601.270 kb on - strand, within Xcc-8004.4835.1at 4601.270 kb on - strand, within Xcc-8004.4835.1at 4601.270 kb on - strand, within Xcc-8004.4835.1at 4601.435 kb on + strand, within Xcc-8004.4835.1at 4601.569 kb on + strand, within Xcc-8004.4835.1at 4601.569 kb on + strand, within Xcc-8004.4835.1at 4601.569 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.572 kb on + strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.573 kb on - strand, within Xcc-8004.4835.1at 4601.575 kb on + strand, within Xcc-8004.4835.1at 4601.575 kb on + strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.576 kb on - strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.650 kb on + strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.651 kb on - strand, within Xcc-8004.4835.1at 4601.814 kb on + strandat 4602.045 kb on + strandat 4602.156 kb on + strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.157 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.220 kb on - strand, within Xcc-8004.4836.1at 4602.241 kb on + strand, within Xcc-8004.4836.1at 4602.486 kb on + strand, within Xcc-8004.4836.1at 4602.487 kb on - strand, within Xcc-8004.4836.1at 4602.487 kb on - strand, within Xcc-8004.4836.1at 4602.495 kb on + strand, within Xcc-8004.4836.1at 4602.495 kb on + strand, within Xcc-8004.4836.1at 4602.623 kb on + strand, within Xcc-8004.4836.1at 4602.624 kb on - strand, within Xcc-8004.4836.1at 4602.624 kb on - strand, within Xcc-8004.4836.1at 4602.690 kb on - strand, within Xcc-8004.4836.1at 4602.690 kb on - strand, within Xcc-8004.4836.1at 4602.731 kb on - strand, within Xcc-8004.4836.1at 4602.758 kb on + strand, within Xcc-8004.4836.1at 4602.758 kb on + strand, within Xcc-8004.4836.1at 4602.759 kb on - strand, within Xcc-8004.4836.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,599,468 + Xcc-8004.4834.1 0.31 -0.1
4,599,468 + Xcc-8004.4834.1 0.31 -1.9
4,599,469 - Xcc-8004.4834.1 0.31 +0.1
4,599,469 - Xcc-8004.4834.1 0.31 +0.0
4,599,469 - Xcc-8004.4834.1 0.31 -1.9
4,599,469 - Xcc-8004.4834.1 0.31 -1.7
4,599,469 - Xcc-8004.4834.1 0.31 -0.9
4,599,562 + Xcc-8004.4834.1 0.40 +0.0
4,599,633 - Xcc-8004.4834.1 0.47 +0.1
4,599,768 + Xcc-8004.4834.1 0.61 -1.4
4,599,768 + Xcc-8004.4834.1 0.61 -0.7
4,599,768 + Xcc-8004.4834.1 0.61 +0.0
4,599,801 + Xcc-8004.4834.1 0.64 -2.5
4,599,801 + Xcc-8004.4834.1 0.64 +0.7
4,599,801 + Xcc-8004.4834.1 0.64 -2.1
4,599,802 - Xcc-8004.4834.1 0.64 -0.6
4,599,802 - Xcc-8004.4834.1 0.64 -0.9
4,599,871 + Xcc-8004.4834.1 0.71 -1.5
4,600,007 - Xcc-8004.4834.1 0.85 +0.9
4,600,071 + -0.3
4,600,305 + +0.3
4,600,305 + +0.3
4,600,306 - -0.2
4,600,306 - -2.5
4,600,600 + Xcc-8004.4835.1 0.13 +1.0
4,600,600 + Xcc-8004.4835.1 0.13 -0.3
4,600,600 + Xcc-8004.4835.1 0.13 +1.0
4,600,601 - Xcc-8004.4835.1 0.14 +0.7
4,600,951 + Xcc-8004.4835.1 0.36 +0.5
4,600,951 + Xcc-8004.4835.1 0.36 +0.6
4,600,951 + Xcc-8004.4835.1 0.36 -0.3
4,600,951 + Xcc-8004.4835.1 0.36 -2.3
4,600,951 + Xcc-8004.4835.1 0.36 -0.7
4,600,951 + Xcc-8004.4835.1 0.36 -0.2
4,600,951 + Xcc-8004.4835.1 0.36 +0.4
4,600,951 + Xcc-8004.4835.1 0.36 -0.9
4,600,952 - Xcc-8004.4835.1 0.36 -0.7
4,600,952 - Xcc-8004.4835.1 0.36 -0.2
4,600,952 - Xcc-8004.4835.1 0.36 +0.3
4,600,952 - Xcc-8004.4835.1 0.36 -0.4
4,601,177 - Xcc-8004.4835.1 0.50 -0.4
4,601,177 - Xcc-8004.4835.1 0.50 -1.1
4,601,177 - Xcc-8004.4835.1 0.50 -0.2
4,601,177 - Xcc-8004.4835.1 0.50 -0.3
4,601,269 + Xcc-8004.4835.1 0.56 +0.9
4,601,269 + Xcc-8004.4835.1 0.56 +0.6
4,601,269 + Xcc-8004.4835.1 0.56 +0.4
4,601,269 + Xcc-8004.4835.1 0.56 -0.2
4,601,270 - Xcc-8004.4835.1 0.56 +0.9
4,601,270 - Xcc-8004.4835.1 0.56 -1.6
4,601,270 - Xcc-8004.4835.1 0.56 -0.4
4,601,435 + Xcc-8004.4835.1 0.66 +1.2
4,601,569 + Xcc-8004.4835.1 0.75 -0.3
4,601,569 + Xcc-8004.4835.1 0.75 -0.1
4,601,569 + Xcc-8004.4835.1 0.75 -1.9
4,601,572 + Xcc-8004.4835.1 0.75 -0.2
4,601,572 + Xcc-8004.4835.1 0.75 +0.7
4,601,572 + Xcc-8004.4835.1 0.75 +1.0
4,601,572 + Xcc-8004.4835.1 0.75 -0.6
4,601,572 + Xcc-8004.4835.1 0.75 -1.0
4,601,573 - Xcc-8004.4835.1 0.75 -0.7
4,601,573 - Xcc-8004.4835.1 0.75 -1.0
4,601,573 - Xcc-8004.4835.1 0.75 -1.0
4,601,573 - Xcc-8004.4835.1 0.75 +0.0
4,601,575 + Xcc-8004.4835.1 0.75 -0.3
4,601,575 + Xcc-8004.4835.1 0.75 -1.1
4,601,576 - Xcc-8004.4835.1 0.75 +0.2
4,601,576 - Xcc-8004.4835.1 0.75 -0.8
4,601,576 - Xcc-8004.4835.1 0.75 +0.8
4,601,576 - Xcc-8004.4835.1 0.75 -0.3
4,601,576 - Xcc-8004.4835.1 0.75 -0.1
4,601,576 - Xcc-8004.4835.1 0.75 +0.3
4,601,576 - Xcc-8004.4835.1 0.75 -0.2
4,601,650 + Xcc-8004.4835.1 0.80 +0.9
4,601,650 + Xcc-8004.4835.1 0.80 -0.1
4,601,650 + Xcc-8004.4835.1 0.80 +0.5
4,601,650 + Xcc-8004.4835.1 0.80 +0.7
4,601,650 + Xcc-8004.4835.1 0.80 -0.1
4,601,651 - Xcc-8004.4835.1 0.80 -0.4
4,601,651 - Xcc-8004.4835.1 0.80 -1.0
4,601,651 - Xcc-8004.4835.1 0.80 +0.4
4,601,651 - Xcc-8004.4835.1 0.80 -0.9
4,601,814 + +0.2
4,602,045 + -1.6
4,602,156 + Xcc-8004.4836.1 0.19 +0.5
4,602,157 - Xcc-8004.4836.1 0.19 -0.1
4,602,157 - Xcc-8004.4836.1 0.19 -1.1
4,602,157 - Xcc-8004.4836.1 0.19 -1.3
4,602,220 - Xcc-8004.4836.1 0.26 +0.7
4,602,220 - Xcc-8004.4836.1 0.26 -0.8
4,602,220 - Xcc-8004.4836.1 0.26 -1.6
4,602,241 + Xcc-8004.4836.1 0.29 +0.5
4,602,486 + Xcc-8004.4836.1 0.56 -0.5
4,602,487 - Xcc-8004.4836.1 0.56 +1.0
4,602,487 - Xcc-8004.4836.1 0.56 -1.5
4,602,495 + Xcc-8004.4836.1 0.57 -0.9
4,602,495 + Xcc-8004.4836.1 0.57 +0.9
4,602,623 + Xcc-8004.4836.1 0.71 -0.5
4,602,624 - Xcc-8004.4836.1 0.71 +0.1
4,602,624 - Xcc-8004.4836.1 0.71 -1.1
4,602,690 - Xcc-8004.4836.1 0.79 -0.5
4,602,690 - Xcc-8004.4836.1 0.79 -1.6
4,602,731 - Xcc-8004.4836.1 0.83 -1.5
4,602,758 + Xcc-8004.4836.1 0.86 -1.3
4,602,758 + Xcc-8004.4836.1 0.86 -0.1
4,602,759 - Xcc-8004.4836.1 0.86 +0.6

Or see this region's nucleotide sequence