Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4824.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4823.1 and Xcc-8004.4824.1 are separated by 324 nucleotidesXcc-8004.4824.1 and Xcc-8004.4825.1 are separated by 255 nucleotidesXcc-8004.4825.1 and Xcc-8004.4826.1 are separated by 94 nucleotides Xcc-8004.4823.1: Xcc-8004.4823.1 - PQQ-dependent oxidoreductase, gdhB family, at 4,588,353 to 4,589,531 Xcc-8004.4823.1 Xcc-8004.4824.1: Xcc-8004.4824.1 - Beta-glucosidase (EC 3.2.1.21), at 4,589,856 to 4,592,027 Xcc-8004.4824.1 Xcc-8004.4825.1: Xcc-8004.4825.1 - Dihydroneopterin aldolase (EC 4.1.2.25), at 4,592,283 to 4,592,636 Xcc-8004.4825.1 Xcc-8004.4826.1: Xcc-8004.4826.1 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 4,592,731 to 4,593,795 Xcc-8004.4826.1 Position (kb) 4589 4590 4591 4592 4593Strain fitness (log2 ratio) -3 -2 -1 0 1at 4589.146 kb on - strand, within Xcc-8004.4823.1at 4589.178 kb on + strand, within Xcc-8004.4823.1at 4589.178 kb on + strand, within Xcc-8004.4823.1at 4589.178 kb on + strand, within Xcc-8004.4823.1at 4589.178 kb on + strand, within Xcc-8004.4823.1at 4589.178 kb on + strand, within Xcc-8004.4823.1at 4589.178 kb on - strand, within Xcc-8004.4823.1at 4589.179 kb on - strand, within Xcc-8004.4823.1at 4589.179 kb on - strand, within Xcc-8004.4823.1at 4589.277 kb on + strand, within Xcc-8004.4823.1at 4589.278 kb on - strand, within Xcc-8004.4823.1at 4589.278 kb on - strand, within Xcc-8004.4823.1at 4589.278 kb on - strand, within Xcc-8004.4823.1at 4589.852 kb on + strandat 4589.852 kb on + strandat 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.091 kb on + strand, within Xcc-8004.4824.1at 4590.092 kb on - strand, within Xcc-8004.4824.1at 4590.128 kb on + strand, within Xcc-8004.4824.1at 4590.217 kb on + strand, within Xcc-8004.4824.1at 4590.217 kb on + strand, within Xcc-8004.4824.1at 4590.218 kb on - strand, within Xcc-8004.4824.1at 4590.218 kb on - strand, within Xcc-8004.4824.1at 4590.281 kb on - strand, within Xcc-8004.4824.1at 4590.281 kb on - strand, within Xcc-8004.4824.1at 4590.328 kb on + strand, within Xcc-8004.4824.1at 4590.328 kb on + strand, within Xcc-8004.4824.1at 4590.328 kb on + strand, within Xcc-8004.4824.1at 4590.329 kb on - strand, within Xcc-8004.4824.1at 4590.329 kb on - strand, within Xcc-8004.4824.1at 4590.334 kb on + strand, within Xcc-8004.4824.1at 4590.334 kb on + strand, within Xcc-8004.4824.1at 4590.335 kb on - strand, within Xcc-8004.4824.1at 4590.391 kb on + strand, within Xcc-8004.4824.1at 4590.392 kb on - strand, within Xcc-8004.4824.1at 4590.443 kb on - strand, within Xcc-8004.4824.1at 4590.778 kb on + strand, within Xcc-8004.4824.1at 4590.778 kb on + strand, within Xcc-8004.4824.1at 4590.778 kb on + strand, within Xcc-8004.4824.1at 4590.779 kb on - strand, within Xcc-8004.4824.1at 4590.779 kb on - strand, within Xcc-8004.4824.1at 4591.118 kb on - strand, within Xcc-8004.4824.1at 4591.192 kb on + strand, within Xcc-8004.4824.1at 4591.226 kb on - strand, within Xcc-8004.4824.1at 4591.423 kb on + strand, within Xcc-8004.4824.1at 4591.423 kb on + strand, within Xcc-8004.4824.1at 4591.423 kb on + strand, within Xcc-8004.4824.1at 4591.423 kb on + strand, within Xcc-8004.4824.1at 4591.423 kb on + strand, within Xcc-8004.4824.1at 4591.424 kb on - strand, within Xcc-8004.4824.1at 4591.473 kb on - strand, within Xcc-8004.4824.1at 4591.545 kb on - strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.624 kb on + strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4591.625 kb on - strand, within Xcc-8004.4824.1at 4592.247 kb on + strandat 4592.259 kb on + strandat 4592.259 kb on + strandat 4592.260 kb on - strandat 4592.260 kb on - strandat 4592.260 kb on - strandat 4592.288 kb on + strandat 4592.288 kb on + strandat 4592.288 kb on + strandat 4592.289 kb on - strandat 4592.663 kb on - strandat 4592.670 kb on - strandat 4592.733 kb on - strandat 4592.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,589,146 - Xcc-8004.4823.1 0.67 -1.0
4,589,178 + Xcc-8004.4823.1 0.70 -0.3
4,589,178 + Xcc-8004.4823.1 0.70 +0.2
4,589,178 + Xcc-8004.4823.1 0.70 +0.6
4,589,178 + Xcc-8004.4823.1 0.70 +0.0
4,589,178 + Xcc-8004.4823.1 0.70 -0.5
4,589,178 - Xcc-8004.4823.1 0.70 +1.4
4,589,179 - Xcc-8004.4823.1 0.70 +1.1
4,589,179 - Xcc-8004.4823.1 0.70 -0.2
4,589,277 + Xcc-8004.4823.1 0.78 -0.9
4,589,278 - Xcc-8004.4823.1 0.78 -0.1
4,589,278 - Xcc-8004.4823.1 0.78 -1.2
4,589,278 - Xcc-8004.4823.1 0.78 -0.1
4,589,852 + -0.6
4,589,852 + +0.5
4,590,091 + Xcc-8004.4824.1 0.11 -3.5
4,590,091 + Xcc-8004.4824.1 0.11 -1.6
4,590,091 + Xcc-8004.4824.1 0.11 -0.4
4,590,091 + Xcc-8004.4824.1 0.11 -0.0
4,590,091 + Xcc-8004.4824.1 0.11 -1.8
4,590,091 + Xcc-8004.4824.1 0.11 -1.2
4,590,091 + Xcc-8004.4824.1 0.11 -3.2
4,590,091 + Xcc-8004.4824.1 0.11 -1.2
4,590,092 - Xcc-8004.4824.1 0.11 -2.5
4,590,128 + Xcc-8004.4824.1 0.13 -1.7
4,590,217 + Xcc-8004.4824.1 0.17 -1.5
4,590,217 + Xcc-8004.4824.1 0.17 -1.4
4,590,218 - Xcc-8004.4824.1 0.17 -1.3
4,590,218 - Xcc-8004.4824.1 0.17 -2.2
4,590,281 - Xcc-8004.4824.1 0.20 -2.3
4,590,281 - Xcc-8004.4824.1 0.20 -0.1
4,590,328 + Xcc-8004.4824.1 0.22 -0.6
4,590,328 + Xcc-8004.4824.1 0.22 -1.7
4,590,328 + Xcc-8004.4824.1 0.22 -1.5
4,590,329 - Xcc-8004.4824.1 0.22 -2.7
4,590,329 - Xcc-8004.4824.1 0.22 -3.2
4,590,334 + Xcc-8004.4824.1 0.22 -0.0
4,590,334 + Xcc-8004.4824.1 0.22 -1.5
4,590,335 - Xcc-8004.4824.1 0.22 -0.9
4,590,391 + Xcc-8004.4824.1 0.25 -2.1
4,590,392 - Xcc-8004.4824.1 0.25 -2.8
4,590,443 - Xcc-8004.4824.1 0.27 -1.5
4,590,778 + Xcc-8004.4824.1 0.42 -0.8
4,590,778 + Xcc-8004.4824.1 0.42 +0.4
4,590,778 + Xcc-8004.4824.1 0.42 -3.3
4,590,779 - Xcc-8004.4824.1 0.42 -1.7
4,590,779 - Xcc-8004.4824.1 0.42 -1.6
4,591,118 - Xcc-8004.4824.1 0.58 +0.4
4,591,192 + Xcc-8004.4824.1 0.62 -1.4
4,591,226 - Xcc-8004.4824.1 0.63 +0.4
4,591,423 + Xcc-8004.4824.1 0.72 -0.8
4,591,423 + Xcc-8004.4824.1 0.72 -1.8
4,591,423 + Xcc-8004.4824.1 0.72 -1.8
4,591,423 + Xcc-8004.4824.1 0.72 -2.9
4,591,423 + Xcc-8004.4824.1 0.72 -2.4
4,591,424 - Xcc-8004.4824.1 0.72 -0.9
4,591,473 - Xcc-8004.4824.1 0.74 -1.3
4,591,545 - Xcc-8004.4824.1 0.78 +0.1
4,591,624 + Xcc-8004.4824.1 0.81 -2.3
4,591,624 + Xcc-8004.4824.1 0.81 -2.8
4,591,624 + Xcc-8004.4824.1 0.81 -1.3
4,591,624 + Xcc-8004.4824.1 0.81 -1.6
4,591,624 + Xcc-8004.4824.1 0.81 -3.1
4,591,624 + Xcc-8004.4824.1 0.81 -1.8
4,591,624 + Xcc-8004.4824.1 0.81 -2.6
4,591,624 + Xcc-8004.4824.1 0.81 -0.6
4,591,624 + Xcc-8004.4824.1 0.81 -2.3
4,591,624 + Xcc-8004.4824.1 0.81 -1.2
4,591,625 - Xcc-8004.4824.1 0.81 -0.5
4,591,625 - Xcc-8004.4824.1 0.81 -1.1
4,591,625 - Xcc-8004.4824.1 0.81 +0.7
4,591,625 - Xcc-8004.4824.1 0.81 -0.5
4,591,625 - Xcc-8004.4824.1 0.81 -1.6
4,591,625 - Xcc-8004.4824.1 0.81 -3.1
4,591,625 - Xcc-8004.4824.1 0.81 -3.4
4,591,625 - Xcc-8004.4824.1 0.81 -1.6
4,591,625 - Xcc-8004.4824.1 0.81 -2.1
4,591,625 - Xcc-8004.4824.1 0.81 -0.8
4,591,625 - Xcc-8004.4824.1 0.81 -0.3
4,591,625 - Xcc-8004.4824.1 0.81 -2.0
4,592,247 + +0.2
4,592,259 + +0.4
4,592,259 + +0.6
4,592,260 - -0.1
4,592,260 - +0.3
4,592,260 - -1.7
4,592,288 + +0.1
4,592,288 + +0.2
4,592,288 + -0.8
4,592,289 - +0.3
4,592,663 - +0.5
4,592,670 - +0.8
4,592,733 - +1.2
4,592,733 - -0.2

Or see this region's nucleotide sequence