Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4820.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,585,838	+		Xcc-8004.4819.1	0.41	-0.0
4,585,931	+		Xcc-8004.4819.1	0.48	+0.1
4,585,932	-		Xcc-8004.4819.1	0.48	+1.7
4,585,971	-		Xcc-8004.4819.1	0.51	+0.1
4,586,036	+		Xcc-8004.4819.1	0.56	+0.9
4,586,036	+		Xcc-8004.4819.1	0.56	+0.3
4,586,037	-		Xcc-8004.4819.1	0.56	-0.8
4,586,037	-		Xcc-8004.4819.1	0.56	+0.0
4,586,037	-		Xcc-8004.4819.1	0.56	-2.2
4,586,037	-		Xcc-8004.4819.1	0.56	-0.7
4,586,037	-		Xcc-8004.4819.1	0.56	+0.5
4,586,037	-		Xcc-8004.4819.1	0.56	+1.0
4,586,037	-		Xcc-8004.4819.1	0.56	+0.4
4,586,037	-		Xcc-8004.4819.1	0.56	+0.1
4,586,037	-		Xcc-8004.4819.1	0.56	+0.7
4,586,037	-		Xcc-8004.4819.1	0.56	-2.8
4,586,037	-		Xcc-8004.4819.1	0.56	-0.0
4,586,383	-		Xcc-8004.4819.1	0.83	+1.0
4,586,383	-		Xcc-8004.4819.1	0.83	+0.1
4,586,390	+		Xcc-8004.4819.1	0.83	+0.1
4,586,390	+		Xcc-8004.4819.1	0.83	-0.8
4,586,390	+		Xcc-8004.4819.1	0.83	-0.2
4,586,390	+		Xcc-8004.4819.1	0.83	-1.2
4,586,391	-		Xcc-8004.4819.1	0.83	-0.8
4,586,391	-		Xcc-8004.4819.1	0.83	-2.8
4,586,393	-		Xcc-8004.4819.1	0.84	+0.3
4,586,579	+				-0.5
4,586,579	+				+0.2
4,586,579	+				-0.1
4,586,579	+				-0.0
4,586,579	+				-1.4
4,586,580	-				-0.3
4,586,580	-				-1.2
4,586,580	-				-0.2
4,586,580	-				-0.1
4,586,580	-				-0.5
4,586,644	+				-1.1
4,586,644	+				+1.6
4,586,644	+				-1.1
4,586,645	-				+1.2
4,586,645	-				-0.3
4,586,711	+				-0.0
4,586,711	+				-1.1
4,586,712	-				+0.3
4,586,999	-		Xcc-8004.4820.1	0.61	-1.6
4,586,999	-		Xcc-8004.4820.1	0.61	-1.8
4,587,159	+				-2.5
4,587,164	+				+0.1
4,587,164	+				-0.4
4,587,164	+				+0.2
4,587,164	+				-2.2
4,587,164	+				+0.5
4,587,164	+				-1.5
4,587,165	-				-0.9
4,587,165	-				+0.0
4,587,165	-				+0.0
4,587,250	+				-1.8
4,587,251	-				+0.1
4,587,251	-				+0.1
4,587,283	+				+2.4
4,587,283	+				+0.6
4,587,283	+				+0.2
4,587,283	+				-1.0
4,587,284	-				+0.4
4,587,284	-				-0.8
4,587,284	-				-0.5
4,587,311	-				+0.1
4,587,311	-				-0.4
4,587,311	-				-1.0
4,587,311	-				+0.1
4,587,330	+				-1.0
4,587,330	+				-0.1
4,587,331	-				-0.3
4,587,331	-				-0.4
4,587,331	-				+0.5
4,587,373	+				+0.4
4,587,428	-		Xcc-8004.4821.1	0.19	+0.2
4,587,460	+		Xcc-8004.4821.1	0.28	-1.8
4,587,479	-		Xcc-8004.4821.1	0.34	+1.9
4,587,499	+		Xcc-8004.4821.1	0.40	-1.0
4,587,500	-		Xcc-8004.4821.1	0.40	-0.7
4,587,500	-		Xcc-8004.4821.1	0.40	+0.6
4,587,500	-		Xcc-8004.4821.1	0.40	+2.0
4,587,545	-		Xcc-8004.4821.1	0.53	+0.2
4,587,855	-		Xcc-8004.4822.1	0.25	-1.3
4,587,855	-		Xcc-8004.4822.1	0.25	-0.5
4,587,867	-		Xcc-8004.4822.1	0.27	-0.3
4,587,867	-		Xcc-8004.4822.1	0.27	+0.4
4,587,867	-		Xcc-8004.4822.1	0.27	+0.3
4,587,959	+		Xcc-8004.4822.1	0.49	-0.6
4,587,960	-		Xcc-8004.4822.1	0.49	-0.5
4,587,962	+		Xcc-8004.4822.1	0.49	+0.1
4,587,962	+		Xcc-8004.4822.1	0.49	+0.1
4,587,962	+		Xcc-8004.4822.1	0.49	+0.7
4,587,962	+		Xcc-8004.4822.1	0.49	+0.8
4,587,963	-		Xcc-8004.4822.1	0.49	-0.6
4,587,981	+		Xcc-8004.4822.1	0.54	+0.5
4,587,982	-		Xcc-8004.4822.1	0.54	+0.0
4,588,055	+		Xcc-8004.4822.1	0.71	+0.7
4,588,055	+		Xcc-8004.4822.1	0.71	-0.0
4,588,055	+		Xcc-8004.4822.1	0.71	-0.9
4,588,055	+		Xcc-8004.4822.1	0.71	+0.1
4,588,056	-		Xcc-8004.4822.1	0.71	+0.6
4,588,056	-		Xcc-8004.4822.1	0.71	-1.8
4,588,056	-		Xcc-8004.4822.1	0.71	+0.6
4,588,056	-		Xcc-8004.4822.1	0.71	+0.4
4,588,058	+		Xcc-8004.4822.1	0.71	+0.7
4,588,058	+		Xcc-8004.4822.1	0.71	-0.3
4,588,107	-		Xcc-8004.4822.1	0.83	-0.4