Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4819.1

Experiment: Pectin from apple 2 g/L (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4817.1 and Xcc-8004.4818.1 are separated by 163 nucleotidesXcc-8004.4818.1 and Xcc-8004.4819.1 overlap by 4 nucleotidesXcc-8004.4819.1 and Xcc-8004.4820.1 are separated by 87 nucleotidesXcc-8004.4820.1 and Xcc-8004.4821.1 are separated by 170 nucleotides Xcc-8004.4817.1: Xcc-8004.4817.1 - L-alanine-DL-glutamate epimerase, at 4,583,273 to 4,584,367 Xcc-8004.4817.1 Xcc-8004.4818.1: Xcc-8004.4818.1 - Gll0911 protein, at 4,584,531 to 4,585,307 Xcc-8004.4818.1 Xcc-8004.4819.1: Xcc-8004.4819.1 - Amino acid permease, at 4,585,304 to 4,586,605 Xcc-8004.4819.1 Xcc-8004.4820.1: Xcc-8004.4820.1 - FIG01211334: hypothetical protein, at 4,586,693 to 4,587,190 Xcc-8004.4820.1 Xcc-8004.4821.1: Xcc-8004.4821.1 - FIG01209726: hypothetical protein, at 4,587,361 to 4,587,708 Xcc-8004.4821.1 Position (kb) 4585 4586 4587Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4584.433 kb on - strandat 4584.437 kb on + strandat 4584.437 kb on + strandat 4584.438 kb on - strandat 4584.438 kb on - strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.468 kb on + strandat 4584.469 kb on - strandat 4584.469 kb on - strandat 4584.469 kb on - strandat 4584.870 kb on + strand, within Xcc-8004.4818.1at 4584.871 kb on - strand, within Xcc-8004.4818.1at 4584.924 kb on + strand, within Xcc-8004.4818.1at 4584.925 kb on - strand, within Xcc-8004.4818.1at 4584.925 kb on - strand, within Xcc-8004.4818.1at 4584.925 kb on - strand, within Xcc-8004.4818.1at 4584.954 kb on + strand, within Xcc-8004.4818.1at 4584.954 kb on + strand, within Xcc-8004.4818.1at 4584.954 kb on + strand, within Xcc-8004.4818.1at 4584.955 kb on - strand, within Xcc-8004.4818.1at 4584.955 kb on - strand, within Xcc-8004.4818.1at 4585.235 kb on - strandat 4585.252 kb on - strandat 4585.403 kb on + strandat 4585.403 kb on + strandat 4585.403 kb on + strandat 4585.404 kb on - strandat 4585.404 kb on - strandat 4585.404 kb on - strandat 4585.500 kb on - strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.541 kb on + strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.542 kb on - strand, within Xcc-8004.4819.1at 4585.547 kb on + strand, within Xcc-8004.4819.1at 4585.547 kb on + strand, within Xcc-8004.4819.1at 4585.547 kb on + strand, within Xcc-8004.4819.1at 4585.547 kb on + strand, within Xcc-8004.4819.1at 4585.548 kb on - strand, within Xcc-8004.4819.1at 4585.548 kb on - strand, within Xcc-8004.4819.1at 4585.548 kb on - strand, within Xcc-8004.4819.1at 4585.549 kb on + strand, within Xcc-8004.4819.1at 4585.549 kb on + strand, within Xcc-8004.4819.1at 4585.550 kb on - strand, within Xcc-8004.4819.1at 4585.838 kb on + strand, within Xcc-8004.4819.1at 4585.931 kb on + strand, within Xcc-8004.4819.1at 4585.932 kb on - strand, within Xcc-8004.4819.1at 4585.971 kb on - strand, within Xcc-8004.4819.1at 4586.036 kb on + strand, within Xcc-8004.4819.1at 4586.036 kb on + strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.037 kb on - strand, within Xcc-8004.4819.1at 4586.383 kb on - strand, within Xcc-8004.4819.1at 4586.383 kb on - strand, within Xcc-8004.4819.1at 4586.390 kb on + strand, within Xcc-8004.4819.1at 4586.390 kb on + strand, within Xcc-8004.4819.1at 4586.390 kb on + strand, within Xcc-8004.4819.1at 4586.390 kb on + strand, within Xcc-8004.4819.1at 4586.391 kb on - strand, within Xcc-8004.4819.1at 4586.391 kb on - strand, within Xcc-8004.4819.1at 4586.393 kb on - strand, within Xcc-8004.4819.1at 4586.579 kb on + strandat 4586.579 kb on + strandat 4586.579 kb on + strandat 4586.579 kb on + strandat 4586.579 kb on + strandat 4586.580 kb on - strandat 4586.580 kb on - strandat 4586.580 kb on - strandat 4586.580 kb on - strandat 4586.580 kb on - strandat 4586.644 kb on + strandat 4586.644 kb on + strandat 4586.644 kb on + strandat 4586.645 kb on - strandat 4586.645 kb on - strandat 4586.711 kb on + strandat 4586.711 kb on + strandat 4586.712 kb on - strandat 4586.999 kb on - strand, within Xcc-8004.4820.1at 4586.999 kb on - strand, within Xcc-8004.4820.1at 4587.159 kb on + strandat 4587.164 kb on + strandat 4587.164 kb on + strandat 4587.164 kb on + strandat 4587.164 kb on + strandat 4587.164 kb on + strandat 4587.164 kb on + strandat 4587.165 kb on - strandat 4587.165 kb on - strandat 4587.165 kb on - strandat 4587.250 kb on + strandat 4587.251 kb on - strandat 4587.251 kb on - strandat 4587.283 kb on + strandat 4587.283 kb on + strandat 4587.283 kb on + strandat 4587.283 kb on + strandat 4587.284 kb on - strandat 4587.284 kb on - strandat 4587.284 kb on - strandat 4587.311 kb on - strandat 4587.311 kb on - strandat 4587.311 kb on - strandat 4587.311 kb on - strandat 4587.330 kb on + strandat 4587.330 kb on + strandat 4587.331 kb on - strandat 4587.331 kb on - strandat 4587.331 kb on - strandat 4587.373 kb on + strandat 4587.428 kb on - strand, within Xcc-8004.4821.1at 4587.460 kb on + strand, within Xcc-8004.4821.1at 4587.479 kb on - strand, within Xcc-8004.4821.1at 4587.499 kb on + strand, within Xcc-8004.4821.1at 4587.500 kb on - strand, within Xcc-8004.4821.1at 4587.500 kb on - strand, within Xcc-8004.4821.1at 4587.500 kb on - strand, within Xcc-8004.4821.1at 4587.545 kb on - strand, within Xcc-8004.4821.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
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4,584,433 - -0.9
4,584,437 + +0.6
4,584,437 + +0.0
4,584,438 - +0.3
4,584,438 - -0.7
4,584,468 + +0.7
4,584,468 + +0.5
4,584,468 + +0.5
4,584,468 + -0.3
4,584,468 + -0.8
4,584,468 + +0.8
4,584,469 - +0.9
4,584,469 - +0.2
4,584,469 - +0.4
4,584,870 + Xcc-8004.4818.1 0.44 -0.6
4,584,871 - Xcc-8004.4818.1 0.44 -2.4
4,584,924 + Xcc-8004.4818.1 0.51 -0.9
4,584,925 - Xcc-8004.4818.1 0.51 -1.8
4,584,925 - Xcc-8004.4818.1 0.51 -1.1
4,584,925 - Xcc-8004.4818.1 0.51 +1.5
4,584,954 + Xcc-8004.4818.1 0.54 +0.0
4,584,954 + Xcc-8004.4818.1 0.54 +0.1
4,584,954 + Xcc-8004.4818.1 0.54 -0.8
4,584,955 - Xcc-8004.4818.1 0.55 +2.4
4,584,955 - Xcc-8004.4818.1 0.55 -0.4
4,585,235 - -0.0
4,585,252 - +0.2
4,585,403 + -1.2
4,585,403 + -0.6
4,585,403 + -0.1
4,585,404 - -0.2
4,585,404 - +0.5
4,585,404 - -0.6
4,585,500 - Xcc-8004.4819.1 0.15 -0.6
4,585,541 + Xcc-8004.4819.1 0.18 -0.7
4,585,541 + Xcc-8004.4819.1 0.18 -0.5
4,585,541 + Xcc-8004.4819.1 0.18 +0.4
4,585,541 + Xcc-8004.4819.1 0.18 -1.9
4,585,541 + Xcc-8004.4819.1 0.18 -0.9
4,585,541 + Xcc-8004.4819.1 0.18 -0.4
4,585,541 + Xcc-8004.4819.1 0.18 +0.5
4,585,541 + Xcc-8004.4819.1 0.18 -0.8
4,585,541 + Xcc-8004.4819.1 0.18 -0.1
4,585,541 + Xcc-8004.4819.1 0.18 -0.6
4,585,542 - Xcc-8004.4819.1 0.18 +0.0
4,585,542 - Xcc-8004.4819.1 0.18 -0.5
4,585,542 - Xcc-8004.4819.1 0.18 +1.2
4,585,542 - Xcc-8004.4819.1 0.18 +0.0
4,585,542 - Xcc-8004.4819.1 0.18 +0.2
4,585,542 - Xcc-8004.4819.1 0.18 +0.7
4,585,542 - Xcc-8004.4819.1 0.18 -0.7
4,585,542 - Xcc-8004.4819.1 0.18 +0.2
4,585,542 - Xcc-8004.4819.1 0.18 +0.8
4,585,542 - Xcc-8004.4819.1 0.18 -0.3
4,585,542 - Xcc-8004.4819.1 0.18 -0.1
4,585,547 + Xcc-8004.4819.1 0.19 +1.7
4,585,547 + Xcc-8004.4819.1 0.19 +0.7
4,585,547 + Xcc-8004.4819.1 0.19 -1.2
4,585,547 + Xcc-8004.4819.1 0.19 -0.2
4,585,548 - Xcc-8004.4819.1 0.19 +1.0
4,585,548 - Xcc-8004.4819.1 0.19 +0.6
4,585,548 - Xcc-8004.4819.1 0.19 -0.2
4,585,549 + Xcc-8004.4819.1 0.19 +0.1
4,585,549 + Xcc-8004.4819.1 0.19 -0.2
4,585,550 - Xcc-8004.4819.1 0.19 +0.2
4,585,838 + Xcc-8004.4819.1 0.41 -0.0
4,585,931 + Xcc-8004.4819.1 0.48 +0.1
4,585,932 - Xcc-8004.4819.1 0.48 +1.7
4,585,971 - Xcc-8004.4819.1 0.51 +0.1
4,586,036 + Xcc-8004.4819.1 0.56 +0.9
4,586,036 + Xcc-8004.4819.1 0.56 +0.3
4,586,037 - Xcc-8004.4819.1 0.56 -0.8
4,586,037 - Xcc-8004.4819.1 0.56 +0.0
4,586,037 - Xcc-8004.4819.1 0.56 -2.2
4,586,037 - Xcc-8004.4819.1 0.56 -0.7
4,586,037 - Xcc-8004.4819.1 0.56 +0.5
4,586,037 - Xcc-8004.4819.1 0.56 +1.0
4,586,037 - Xcc-8004.4819.1 0.56 +0.4
4,586,037 - Xcc-8004.4819.1 0.56 +0.1
4,586,037 - Xcc-8004.4819.1 0.56 +0.7
4,586,037 - Xcc-8004.4819.1 0.56 -2.8
4,586,037 - Xcc-8004.4819.1 0.56 -0.0
4,586,383 - Xcc-8004.4819.1 0.83 +1.0
4,586,383 - Xcc-8004.4819.1 0.83 +0.1
4,586,390 + Xcc-8004.4819.1 0.83 +0.1
4,586,390 + Xcc-8004.4819.1 0.83 -0.8
4,586,390 + Xcc-8004.4819.1 0.83 -0.2
4,586,390 + Xcc-8004.4819.1 0.83 -1.2
4,586,391 - Xcc-8004.4819.1 0.83 -0.8
4,586,391 - Xcc-8004.4819.1 0.83 -2.8
4,586,393 - Xcc-8004.4819.1 0.84 +0.3
4,586,579 + -0.5
4,586,579 + +0.2
4,586,579 + -0.1
4,586,579 + -0.0
4,586,579 + -1.4
4,586,580 - -0.3
4,586,580 - -1.2
4,586,580 - -0.2
4,586,580 - -0.1
4,586,580 - -0.5
4,586,644 + -1.1
4,586,644 + +1.6
4,586,644 + -1.1
4,586,645 - +1.2
4,586,645 - -0.3
4,586,711 + -0.0
4,586,711 + -1.1
4,586,712 - +0.3
4,586,999 - Xcc-8004.4820.1 0.61 -1.6
4,586,999 - Xcc-8004.4820.1 0.61 -1.8
4,587,159 + -2.5
4,587,164 + +0.1
4,587,164 + -0.4
4,587,164 + +0.2
4,587,164 + -2.2
4,587,164 + +0.5
4,587,164 + -1.5
4,587,165 - -0.9
4,587,165 - +0.0
4,587,165 - +0.0
4,587,250 + -1.8
4,587,251 - +0.1
4,587,251 - +0.1
4,587,283 + +2.4
4,587,283 + +0.6
4,587,283 + +0.2
4,587,283 + -1.0
4,587,284 - +0.4
4,587,284 - -0.8
4,587,284 - -0.5
4,587,311 - +0.1
4,587,311 - -0.4
4,587,311 - -1.0
4,587,311 - +0.1
4,587,330 + -1.0
4,587,330 + -0.1
4,587,331 - -0.3
4,587,331 - -0.4
4,587,331 - +0.5
4,587,373 + +0.4
4,587,428 - Xcc-8004.4821.1 0.19 +0.2
4,587,460 + Xcc-8004.4821.1 0.28 -1.8
4,587,479 - Xcc-8004.4821.1 0.34 +1.9
4,587,499 + Xcc-8004.4821.1 0.40 -1.0
4,587,500 - Xcc-8004.4821.1 0.40 -0.7
4,587,500 - Xcc-8004.4821.1 0.40 +0.6
4,587,500 - Xcc-8004.4821.1 0.40 +2.0
4,587,545 - Xcc-8004.4821.1 0.53 +0.2

Or see this region's nucleotide sequence