Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4763.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,532,709	+		Xcc-8004.4762.1	0.64	-0.5
4,532,709	+		Xcc-8004.4762.1	0.64	+0.1
4,532,710	-		Xcc-8004.4762.1	0.64	-0.3
4,532,710	-		Xcc-8004.4762.1	0.64	-0.7
4,533,080	+				+1.4
4,533,080	+				-0.9
4,533,080	+				+1.3
4,533,080	+				+0.9
4,533,081	-				+0.2
4,533,081	-				-0.1
4,533,081	-				+0.0
4,533,081	-				-0.3
4,533,081	-				-0.3
4,533,081	-				+0.0
4,533,081	-				-1.0
4,533,081	-				-0.9
4,533,115	+				-0.3
4,533,164	+				+1.2
4,533,164	+				+0.3
4,533,165	-				-0.0
4,533,165	-				+0.5
4,533,373	+				+0.4
4,533,374	-				+0.7
4,533,387	-				-0.3
4,533,406	-				-0.2
4,533,436	+				+1.0
4,533,437	-				+1.0
4,533,437	-				+0.1
4,533,447	+				-0.0
4,533,447	+				+0.3
4,533,536	+				-0.5
4,533,536	+				-0.2
4,533,536	+				-1.5
4,533,537	-				-0.1
4,533,537	-				+1.0
4,533,537	-				+0.2
4,533,537	-				-0.7
4,533,537	-				+0.5
4,533,537	-				-0.2
4,533,537	-				-1.8
4,535,593	+				-0.3
4,535,594	-				-0.6
4,535,594	-				+0.1
4,535,594	-				+0.4
4,535,594	-				+1.4
4,535,595	+				-0.0
4,535,595	+				-0.6
4,535,595	+				+0.8
4,535,596	-				+0.9
4,535,596	-				-0.2
4,535,729	-		Xcc-8004.4764.1	0.16	-1.2
4,535,758	+		Xcc-8004.4764.1	0.22	-1.8
4,535,759	-		Xcc-8004.4764.1	0.22	+1.1
4,535,862	+		Xcc-8004.4764.1	0.44	+1.5
4,535,962	+		Xcc-8004.4764.1	0.64	+0.6
4,535,962	+		Xcc-8004.4764.1	0.64	+0.1
4,535,963	-		Xcc-8004.4764.1	0.65	-0.1
4,535,963	-		Xcc-8004.4764.1	0.65	+0.7
4,535,963	-		Xcc-8004.4764.1	0.65	-1.3
4,535,963	-		Xcc-8004.4764.1	0.65	-0.8
4,535,963	-		Xcc-8004.4764.1	0.65	+0.4
4,535,963	-		Xcc-8004.4764.1	0.65	-0.1
4,536,012	+		Xcc-8004.4764.1	0.75	+1.0
4,536,013	-		Xcc-8004.4764.1	0.75	-1.1
4,536,013	-		Xcc-8004.4764.1	0.75	-0.3
4,536,013	-		Xcc-8004.4764.1	0.75	+0.1
4,536,016	+		Xcc-8004.4764.1	0.76	-0.1
4,536,016	+		Xcc-8004.4764.1	0.76	+0.5
4,536,017	-		Xcc-8004.4764.1	0.76	+0.6
4,536,017	-		Xcc-8004.4764.1	0.76	-0.4
4,536,073	+		Xcc-8004.4764.1	0.88	-0.1
4,536,100	+				-0.3
4,536,100	+				-0.1
4,536,101	-				+0.0
4,536,137	+				+0.2
4,536,137	+				-2.4
4,536,137	+				-0.9
4,536,137	+				-0.3
4,536,138	-				+1.1
4,536,138	-				-1.0
4,536,138	-				+0.6
4,536,188	+				-0.9
4,536,188	+				-0.1
4,536,188	+				-0.8
4,536,188	+				-0.6
4,536,188	+				-0.0
4,536,188	+				-0.5
4,536,189	-				-0.1
4,536,189	-				+0.1
4,536,189	-				+0.7
4,536,201	-				+0.4
4,536,229	+				+0.2
4,536,230	-				-0.1
4,536,230	-				-0.5
4,536,230	-				-0.3
4,536,235	+				-0.1
4,536,250	+				-1.6
4,536,251	-				+0.7
4,536,251	-				+1.4
4,536,313	+				+0.5
4,536,363	-				-1.8
4,536,404	-				-0.1
4,536,453	+				+0.1
4,536,518	-				+0.4
4,536,563	+				-1.0
4,536,564	-				-0.3
4,536,564	-				-1.0
4,536,564	-				-0.5
4,536,566	+				+0.1
4,536,566	+				-0.3
4,536,567	-				+0.2
4,536,567	-				+0.1
4,536,614	+				+0.1
4,536,614	+				+0.6
4,536,615	-				-0.3
4,536,623	+				+0.0
4,536,624	-				-2.0
4,536,624	-				+0.8
4,536,639	-				-0.8