Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4752.1

Experiment: Pectin from apple 2 g/L (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4750.1 and Xcc-8004.4752.1 are separated by 180 nucleotidesXcc-8004.4752.1 and Xcc-8004.4753.1 are separated by 8 nucleotidesXcc-8004.4753.1 and Xcc-8004.4754.1 are separated by 122 nucleotides Xcc-8004.4750.1: Xcc-8004.4750.1 - FIG01210152: hypothetical protein, at 4,519,201 to 4,520,346 Xcc-8004.4750.1 Xcc-8004.4752.1: Xcc-8004.4752.1 - DNA topoisomerase I (EC 5.99.1.2), at 4,520,527 to 4,523,022 Xcc-8004.4752.1 Xcc-8004.4753.1: Xcc-8004.4753.1 - TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA, at 4,523,031 to 4,523,594 Xcc-8004.4753.1 Xcc-8004.4754.1: Xcc-8004.4754.1 - FIG01211156: hypothetical protein, at 4,523,717 to 4,524,457 Xcc-8004.4754.1 Position (kb) 4520 4521 4522 4523 4524Strain fitness (log2 ratio) -2 -1 0 1 2at 4519.605 kb on + strand, within Xcc-8004.4750.1at 4519.606 kb on - strand, within Xcc-8004.4750.1at 4519.747 kb on + strand, within Xcc-8004.4750.1at 4519.813 kb on + strand, within Xcc-8004.4750.1at 4519.813 kb on + strand, within Xcc-8004.4750.1at 4519.813 kb on + strand, within Xcc-8004.4750.1at 4519.814 kb on - strand, within Xcc-8004.4750.1at 4519.814 kb on - strand, within Xcc-8004.4750.1at 4519.814 kb on - strand, within Xcc-8004.4750.1at 4519.814 kb on - strand, within Xcc-8004.4750.1at 4519.814 kb on - strand, within Xcc-8004.4750.1at 4519.814 kb on - strand, within Xcc-8004.4750.1at 4519.814 kb on - strand, within Xcc-8004.4750.1at 4519.924 kb on + strand, within Xcc-8004.4750.1at 4519.925 kb on - strand, within Xcc-8004.4750.1at 4519.925 kb on - strand, within Xcc-8004.4750.1at 4519.925 kb on - strand, within Xcc-8004.4750.1at 4519.954 kb on + strand, within Xcc-8004.4750.1at 4519.954 kb on + strand, within Xcc-8004.4750.1at 4519.955 kb on - strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.080 kb on + strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.081 kb on - strand, within Xcc-8004.4750.1at 4520.209 kb on + strand, within Xcc-8004.4750.1at 4520.209 kb on + strand, within Xcc-8004.4750.1at 4520.210 kb on - strand, within Xcc-8004.4750.1at 4520.210 kb on - strand, within Xcc-8004.4750.1at 4520.210 kb on - strand, within Xcc-8004.4750.1at 4520.210 kb on - strand, within Xcc-8004.4750.1at 4520.210 kb on - strand, within Xcc-8004.4750.1at 4520.275 kb on + strandat 4520.275 kb on + strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.276 kb on - strandat 4520.396 kb on + strandat 4520.396 kb on + strandat 4520.397 kb on - strandat 4520.397 kb on - strandat 4520.397 kb on - strandat 4520.397 kb on - strandat 4520.397 kb on - strandat 4520.397 kb on - strandat 4520.399 kb on + strandat 4520.400 kb on - strandat 4520.400 kb on - strandat 4520.479 kb on + strandat 4520.479 kb on + strandat 4520.479 kb on + strandat 4520.489 kb on + strandat 4520.489 kb on + strandat 4520.489 kb on + strandat 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.708 kb on + strand, within Xcc-8004.4752.1at 4522.709 kb on - strand, within Xcc-8004.4752.1at 4522.709 kb on - strand, within Xcc-8004.4752.1at 4522.793 kb on + strandat 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.813 kb on + strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.814 kb on - strand, within Xcc-8004.4754.1at 4523.827 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.008 kb on + strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1at 4524.009 kb on - strand, within Xcc-8004.4754.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pectin from apple 2 g/L (C)
remove
4,519,605 + Xcc-8004.4750.1 0.35 -1.1
4,519,606 - Xcc-8004.4750.1 0.35 +1.0
4,519,747 + Xcc-8004.4750.1 0.48 +0.9
4,519,813 + Xcc-8004.4750.1 0.53 -2.3
4,519,813 + Xcc-8004.4750.1 0.53 -0.9
4,519,813 + Xcc-8004.4750.1 0.53 -0.8
4,519,814 - Xcc-8004.4750.1 0.53 -0.4
4,519,814 - Xcc-8004.4750.1 0.53 +0.5
4,519,814 - Xcc-8004.4750.1 0.53 +0.3
4,519,814 - Xcc-8004.4750.1 0.53 -0.8
4,519,814 - Xcc-8004.4750.1 0.53 +0.4
4,519,814 - Xcc-8004.4750.1 0.53 -0.1
4,519,814 - Xcc-8004.4750.1 0.53 +1.0
4,519,924 + Xcc-8004.4750.1 0.63 -0.2
4,519,925 - Xcc-8004.4750.1 0.63 +0.0
4,519,925 - Xcc-8004.4750.1 0.63 -0.3
4,519,925 - Xcc-8004.4750.1 0.63 -0.7
4,519,954 + Xcc-8004.4750.1 0.66 +0.2
4,519,954 + Xcc-8004.4750.1 0.66 -2.0
4,519,955 - Xcc-8004.4750.1 0.66 +0.6
4,520,080 + Xcc-8004.4750.1 0.77 +0.3
4,520,080 + Xcc-8004.4750.1 0.77 +0.1
4,520,080 + Xcc-8004.4750.1 0.77 -0.3
4,520,080 + Xcc-8004.4750.1 0.77 +0.3
4,520,080 + Xcc-8004.4750.1 0.77 -0.2
4,520,080 + Xcc-8004.4750.1 0.77 +0.3
4,520,080 + Xcc-8004.4750.1 0.77 -0.3
4,520,080 + Xcc-8004.4750.1 0.77 -0.0
4,520,080 + Xcc-8004.4750.1 0.77 +0.4
4,520,080 + Xcc-8004.4750.1 0.77 +1.1
4,520,080 + Xcc-8004.4750.1 0.77 +0.9
4,520,080 + Xcc-8004.4750.1 0.77 -1.3
4,520,080 + Xcc-8004.4750.1 0.77 +0.2
4,520,080 + Xcc-8004.4750.1 0.77 +0.6
4,520,080 + Xcc-8004.4750.1 0.77 +0.4
4,520,081 - Xcc-8004.4750.1 0.77 +0.5
4,520,081 - Xcc-8004.4750.1 0.77 -0.5
4,520,081 - Xcc-8004.4750.1 0.77 -0.9
4,520,081 - Xcc-8004.4750.1 0.77 -0.6
4,520,081 - Xcc-8004.4750.1 0.77 +0.6
4,520,081 - Xcc-8004.4750.1 0.77 +0.2
4,520,081 - Xcc-8004.4750.1 0.77 +0.3
4,520,081 - Xcc-8004.4750.1 0.77 -0.2
4,520,081 - Xcc-8004.4750.1 0.77 -1.2
4,520,081 - Xcc-8004.4750.1 0.77 +0.7
4,520,081 - Xcc-8004.4750.1 0.77 +0.1
4,520,081 - Xcc-8004.4750.1 0.77 -1.5
4,520,209 + Xcc-8004.4750.1 0.88 +0.2
4,520,209 + Xcc-8004.4750.1 0.88 +0.5
4,520,210 - Xcc-8004.4750.1 0.88 -0.4
4,520,210 - Xcc-8004.4750.1 0.88 +0.7
4,520,210 - Xcc-8004.4750.1 0.88 -0.3
4,520,210 - Xcc-8004.4750.1 0.88 +0.4
4,520,210 - Xcc-8004.4750.1 0.88 -1.3
4,520,275 + -0.4
4,520,275 + +1.0
4,520,276 - +0.8
4,520,276 - +0.2
4,520,276 - +0.6
4,520,276 - +0.2
4,520,276 - +1.0
4,520,276 - -0.1
4,520,276 - -1.2
4,520,276 - -1.2
4,520,276 - -0.6
4,520,276 - -0.6
4,520,276 - +0.4
4,520,396 + -0.5
4,520,396 + +0.4
4,520,397 - -1.0
4,520,397 - +2.2
4,520,397 - -0.4
4,520,397 - +0.2
4,520,397 - -1.2
4,520,397 - +0.2
4,520,399 + +0.0
4,520,400 - -0.0
4,520,400 - -0.5
4,520,479 + +0.8
4,520,479 + -0.8
4,520,479 + -0.6
4,520,489 + -0.3
4,520,489 + +0.2
4,520,489 + -0.9
4,522,708 + Xcc-8004.4752.1 0.87 -1.3
4,522,708 + Xcc-8004.4752.1 0.87 -0.9
4,522,708 + Xcc-8004.4752.1 0.87 -0.9
4,522,708 + Xcc-8004.4752.1 0.87 -0.9
4,522,709 - Xcc-8004.4752.1 0.87 -0.3
4,522,709 - Xcc-8004.4752.1 0.87 -0.9
4,522,793 + -0.6
4,523,813 + Xcc-8004.4754.1 0.13 -0.3
4,523,813 + Xcc-8004.4754.1 0.13 -0.3
4,523,813 + Xcc-8004.4754.1 0.13 -0.7
4,523,813 + Xcc-8004.4754.1 0.13 -0.4
4,523,814 - Xcc-8004.4754.1 0.13 +0.2
4,523,814 - Xcc-8004.4754.1 0.13 -0.1
4,523,814 - Xcc-8004.4754.1 0.13 +0.4
4,523,814 - Xcc-8004.4754.1 0.13 -0.3
4,523,814 - Xcc-8004.4754.1 0.13 +0.5
4,523,814 - Xcc-8004.4754.1 0.13 -0.0
4,523,827 + Xcc-8004.4754.1 0.15 +0.4
4,524,008 + Xcc-8004.4754.1 0.39 -0.9
4,524,008 + Xcc-8004.4754.1 0.39 -0.0
4,524,008 + Xcc-8004.4754.1 0.39 +0.3
4,524,008 + Xcc-8004.4754.1 0.39 +0.1
4,524,008 + Xcc-8004.4754.1 0.39 +1.2
4,524,009 - Xcc-8004.4754.1 0.39 -0.2
4,524,009 - Xcc-8004.4754.1 0.39 -0.8
4,524,009 - Xcc-8004.4754.1 0.39 -1.4
4,524,009 - Xcc-8004.4754.1 0.39 -0.4
4,524,009 - Xcc-8004.4754.1 0.39 +0.8
4,524,009 - Xcc-8004.4754.1 0.39 -0.1

Or see this region's nucleotide sequence