Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4732.1

Experiment: Pectin from apple 2 g/L (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple 2 g/L (C)
4,501,633	+		Xcc-8004.4731.1	0.12	-0.6
4,501,633	+		Xcc-8004.4731.1	0.12	+0.4
4,501,634	-		Xcc-8004.4731.1	0.12	-1.6
4,501,634	-		Xcc-8004.4731.1	0.12	+0.4
4,501,634	-		Xcc-8004.4731.1	0.12	-0.0
4,501,634	-		Xcc-8004.4731.1	0.12	+0.1
4,501,634	-		Xcc-8004.4731.1	0.12	+0.7
4,501,634	-		Xcc-8004.4731.1	0.12	+0.7
4,501,634	-		Xcc-8004.4731.1	0.12	-0.6
4,501,757	-		Xcc-8004.4731.1	0.40	-0.2
4,502,081	+				+0.0
4,502,081	+				-0.5
4,502,082	-				-0.1
4,502,082	-				-0.2
4,502,082	-				-0.4
4,502,082	-				+0.7
4,502,082	-				+0.7
4,502,107	+				+0.8
4,502,107	+				+0.4
4,502,108	-				+0.7
4,502,108	-				-0.1
4,502,108	-				-0.7
4,502,150	+				-0.9
4,502,150	+				-0.2
4,502,150	+				-0.8
4,502,151	-				-0.3
4,502,151	-				-1.8
4,502,151	-				-1.8
4,502,151	-				-1.9
4,502,151	-				-0.3
4,502,151	-				-0.6
4,502,368	+		Xcc-8004.4732.1	0.32	-0.3
4,502,369	-		Xcc-8004.4732.1	0.32	-0.3
4,502,540	+		Xcc-8004.4732.1	0.50	-1.1
4,502,716	-		Xcc-8004.4732.1	0.67	+2.1
4,502,798	+		Xcc-8004.4732.1	0.76	-0.6
4,502,948	+				+1.7
4,502,949	-				+0.1
4,502,960	+				+0.1
4,502,960	+				-1.5
4,502,960	+				-1.5
4,502,960	+				-1.6
4,502,960	+				-0.6
4,502,960	+				+0.1
4,502,961	-				-0.8
4,502,961	-				-2.0
4,502,961	-				-0.3
4,502,961	-				-1.9
4,503,008	+				+0.3
4,503,156	+				-0.5
4,503,157	-				-0.1
4,503,157	-				-1.5
4,503,157	-				+0.8
4,503,217	+				+0.5
4,503,217	+				-1.9
4,503,217	+				-0.3
4,503,217	+				-0.5
4,503,218	-				-0.8
4,503,218	-				-0.8
4,503,218	-				-0.1
4,503,218	-				-0.4
4,503,218	-				-1.1
4,503,218	-				+0.7
4,503,218	-				+0.4
4,503,433	+		Xcc-8004.4733.1	0.50	-0.5
4,503,433	+		Xcc-8004.4733.1	0.50	+0.2
4,503,433	+		Xcc-8004.4733.1	0.50	-1.6
4,503,433	+		Xcc-8004.4733.1	0.50	+1.1
4,503,433	+		Xcc-8004.4733.1	0.50	-0.2
4,503,433	+		Xcc-8004.4733.1	0.50	+0.9
4,503,433	+		Xcc-8004.4733.1	0.50	-1.4
4,503,434	-		Xcc-8004.4733.1	0.50	-0.4
4,503,434	-		Xcc-8004.4733.1	0.50	-0.2
4,503,434	-		Xcc-8004.4733.1	0.50	-0.5
4,503,434	-		Xcc-8004.4733.1	0.50	+0.2
4,503,434	-		Xcc-8004.4733.1	0.50	+0.6
4,503,434	-		Xcc-8004.4733.1	0.50	-0.6
4,503,434	-		Xcc-8004.4733.1	0.50	-0.9
4,503,454	+		Xcc-8004.4733.1	0.54	-0.1
4,503,454	+		Xcc-8004.4733.1	0.54	-1.2
4,503,454	+		Xcc-8004.4733.1	0.54	-0.7
4,503,454	+		Xcc-8004.4733.1	0.54	+0.8
4,503,454	+		Xcc-8004.4733.1	0.54	-0.9
4,503,455	-		Xcc-8004.4733.1	0.54	-0.5
4,503,455	-		Xcc-8004.4733.1	0.54	+0.1
4,503,488	-		Xcc-8004.4733.1	0.60	-0.2
4,503,488	-		Xcc-8004.4733.1	0.60	+0.7
4,503,488	-		Xcc-8004.4733.1	0.60	+0.5
4,503,607	+		Xcc-8004.4733.1	0.83	+0.4
4,503,607	+		Xcc-8004.4733.1	0.83	-0.8
4,503,607	+		Xcc-8004.4733.1	0.83	+0.6
4,503,607	+		Xcc-8004.4733.1	0.83	-2.7
4,503,607	+		Xcc-8004.4733.1	0.83	+0.7
4,503,607	+		Xcc-8004.4733.1	0.83	+0.0
4,503,608	-		Xcc-8004.4733.1	0.83	+0.6
4,503,608	-		Xcc-8004.4733.1	0.83	+0.5
4,503,608	-		Xcc-8004.4733.1	0.83	-0.2
4,503,608	-		Xcc-8004.4733.1	0.83	-0.3
4,503,608	-		Xcc-8004.4733.1	0.83	+2.3
4,503,608	-		Xcc-8004.4733.1	0.83	+1.0
4,503,727	-				-0.1
4,503,727	-				-0.8
4,503,825	+				-0.2
4,503,825	+				-0.3
4,503,825	+				-1.7
4,503,826	-				-1.4